PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Thecc1EG020332t2 | ||||||||
Common Name | TCM_020332 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
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Family | G2-like | ||||||||
Protein Properties | Length: 218aa MW: 23927.3 Da PI: 7.3865 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 34.7 | 3.9e-11 | 1 | 23 | 33 | 55 |
G2-like 33 lelmkvkgLtlehvkSHLQkYRl 55 +++m+vkgLtl+h+kSHLQkYRl Thecc1EG020332t2 1 MRTMGVKGLTLYHLKSHLQKYRL 23 689*******************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 1.9E-10 | 1 | 24 | IPR009057 | Homeodomain-like |
Pfam | PF14379 | 4.3E-27 | 67 | 113 | IPR025756 | MYB-CC type transcription factor, LHEQLE-containing domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009567 | Biological Process | double fertilization forming a zygote and endosperm | ||||
GO:0010628 | Biological Process | positive regulation of gene expression | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 218 aa Download sequence Send to blast |
MRTMGVKGLT LYHLKSHLQK YRLGKQSCKE STDNSKDASC VAESQDTGSS TTSTSRMVAQ 60 DLNDGYQVTE ALRVQMEVQR RLHEQLEVQR RLQLRIEAQG KYLQSILEKA CKALNDQAAA 120 SAGLEAAREE LSELAIKVSN DCQEMIPLDN IKLPSLSELA AALENKTASS MPVSPMGVGS 180 QAAIMKKRPR PLFGNADPLP LDGNIRQEIE WVMPNIS* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 186 | 190 | KRPRP |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator (PubMed:26586833). Probable component of the central regulatory system controlling transcriptional responses to Pi starvation (PubMed:26586833). Binds in a sequence-specific manner to phosphate starvation-regulated promoters (PubMed:26586833). Required for female gametophyte development and function (PubMed:15634699). {ECO:0000269|PubMed:15634699, ECO:0000269|PubMed:26586833}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Up-regulated in roots by low Pi. {ECO:0000269|PubMed:26586833}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017975884.1 | 1e-157 | PREDICTED: protein PHR1-LIKE 3 isoform X2 | ||||
Swissprot | Q8LAJ7 | 5e-97 | PHL3_ARATH; Protein PHR1-LIKE 3 | ||||
TrEMBL | A0A061ELQ7 | 1e-158 | A0A061ELQ7_THECC; Homeodomain-like superfamily protein isoform 2 | ||||
STRING | EOY05301 | 1e-157 | (Theobroma cacao) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G13640.1 | 3e-74 | G2-like family protein |
Link Out ? help Back to Top | |
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Phytozome | Thecc1EG020332t2 |
Entrez Gene | 18602734 |
Publications ? help Back to Top | |||
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