PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thecc1EG020332t1
Common NameTCM_020332
Organism
Theobroma cacao
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
Family G2-like
Protein Properties Length: 288aa    MW: 31446.8 Da    PI: 6.5219
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thecc1EG020332t1genomeCGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like109.12.3e-343993155
           G2-like  1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55
                      kprlrWt eLHerFv+av+qLGG++kAtPkti+++m+vkgLtl+h+kSHLQkYRl
  Thecc1EG020332t1 39 KPRLRWTAELHERFVDAVTQLGGPDKATPKTIMRTMGVKGLTLYHLKSHLQKYRL 93
                      79****************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129413.0953696IPR017930Myb domain
Gene3DG3DSA:1.10.10.602.7E-333694IPR009057Homeodomain-like
SuperFamilySSF466891.63E-173896IPR009057Homeodomain-like
TIGRFAMsTIGR015571.8E-243994IPR006447Myb domain, plants
PfamPF002498.4E-94192IPR001005SANT/Myb domain
PfamPF143796.8E-27137183IPR025756MYB-CC type transcription factor, LHEQLE-containing domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009567Biological Processdouble fertilization forming a zygote and endosperm
GO:0010628Biological Processpositive regulation of gene expression
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 288 aa     Download sequence    Send to blast
MYPAIRSLPL DGSVGDYQGS LDGTNLPGDA CLVLTTDPKP RLRWTAELHE RFVDAVTQLG  60
GPDKATPKTI MRTMGVKGLT LYHLKSHLQK YRLGKQSCKE STDNSKDASC VAESQDTGSS  120
TTSTSRMVAQ DLNDGYQVTE ALRVQMEVQR RLHEQLEVQR RLQLRIEAQG KYLQSILEKA  180
CKALNDQAAA SAGLEAAREE LSELAIKVSN DCQEMIPLDN IKLPSLSELA AALENKTASS  240
MPVSPMGVGS QAAIMKKRPR PLFGNADPLP LDGNIRQEIE WVMPNIS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4k_A1e-193995258Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B1e-193995258Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_A8e-203995157Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B8e-203995157Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C8e-203995157Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D8e-203995157Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A1e-193995258Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C1e-193995258Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D1e-193995258Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F1e-193995258Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H1e-193995258Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J1e-193995258Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1256260KRPRP
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator (PubMed:26586833). Probable component of the central regulatory system controlling transcriptional responses to Pi starvation (PubMed:26586833). Binds in a sequence-specific manner to phosphate starvation-regulated promoters (PubMed:26586833). Required for female gametophyte development and function (PubMed:15634699). {ECO:0000269|PubMed:15634699, ECO:0000269|PubMed:26586833}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Up-regulated in roots by low Pi. {ECO:0000269|PubMed:26586833}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017975884.10.0PREDICTED: protein PHR1-LIKE 3 isoform X2
SwissprotQ8LAJ71e-146PHL3_ARATH; Protein PHR1-LIKE 3
TrEMBLA0A061EKC10.0A0A061EKC1_THECC; Homeodomain-like superfamily protein isoform 1
STRINGEOY053010.0(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM35152561
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G13640.11e-122G2-like family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Motamayor JC, et al.
    The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color.
    Genome Biol., 2013. 14(6): p. r53
    [PMID:23731509]
  3. Sanz-Fernández M, et al.
    Screening Arabidopsis mutants in genes useful for phytoremediation.
    J. Hazard. Mater., 2017. 335: p. 143-151
    [PMID:28441590]