PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thecc1EG020255t1
Common NameTCM_020255
Organism
Theobroma cacao
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
Family C3H
Protein Properties Length: 382aa    MW: 43295.6 Da    PI: 6.9938
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thecc1EG020255t1genomeCGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH37.93e-12200225126
                       --S---SGGGGTS--TTTTT-SS-SS CS
           zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                       y   +C+++ +tG+C yGd+CkF+H+
  Thecc1EG020255t1 200 YQPDICKDYKETGYCGYGDSCKFMHD 225
                       66789********************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF902292.35E-9198230IPR000571Zinc finger, CCCH-type
SMARTSM003561.1E-7199226IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.878199227IPR000571Zinc finger, CCCH-type
PfamPF006425.4E-10200225IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.0E-12200230IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:3.30.40.101.5E-13264332IPR013083Zinc finger, RING/FYVE/PHD-type
SuperFamilySSF578507.34E-13276320No hitNo description
PfamPF139201.7E-8276317No hitNo description
PROSITE profilePS5008910.409277315IPR001841Zinc finger, RING-type
CDDcd001622.47E-7277318No hitNo description
SMARTSM001841.8E-4277314IPR001841Zinc finger, RING-type
PROSITE patternPS005180292301IPR017907Zinc finger, RING-type, conserved site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 382 aa     Download sequence    Send to blast
MTDSNESQYP GKEPQQSETE PQQSEQVCNF FRKPTKGKNI RKRTINEDED EDSRNETSLL  60
QNHKKTLKPD NKLYFSTGPS KSAAATESNI ESDKPIFQFE SSKEIQVHND SRATATLETE  120
TEVTKDARAI REKVLKQSEE VLKGKSTSSG GEKLYKGMHG YVDHKAGFRR EQTIASEKAG  180
GSHGPLRASA HIRVSARFDY QPDICKDYKE TGYCGYGDSC KFMHDRGDYK SGWQLEKEWE  240
EAEKARKRNL ALGGDDDDGA GLNQSDDDDD DSLPFACFIC RQPFVDPVVT KCKHYFCEHC  300
ALKHHAKNKK CFVCNQPTLG IFNTAHEIRR KMAEEGMLSL LELGYQLIVL IKCGKKNHPV  360
FVYLFHSVCN CYVVPLTMFI W*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5z56_M1e-60110332113317RING finger protein 113A
5z58_M1e-60110332113317RING finger protein 113A
6ff4_t1e-60110332113317RING finger protein 113A
6ff7_t1e-60110332113317RING finger protein 113A
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017974161.10.0PREDICTED: zinc finger CCCH domain-containing protein 1
SwissprotQ8GX841e-172C3H1_ARATH; Zinc finger CCCH domain-containing protein 1
TrEMBLA0A061EKN30.0A0A061EKN3_THECC; Zinc finger family protein
STRINGEOY051830.0(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM110992634
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G01350.11e-147C3H family protein
Publications ? help Back to Top
  1. Motamayor JC, et al.
    The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color.
    Genome Biol., 2013. 14(6): p. r53
    [PMID:23731509]