PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thecc1EG020177t1
Common NameTCM_020177
Organism
Theobroma cacao
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
Family bHLH
Protein Properties Length: 579aa    MW: 62531.7 Da    PI: 7.7629
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thecc1EG020177t1genomeCGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH26.79.8e-09388435455
                       HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
               HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                       +h+ +Er RR++i +++  L++l+P +    +k   Ka +L + ++Y++sLq
  Thecc1EG020177t1 388 SHSLAERVRREKISERMKFLQDLVPGC----NKVTGKAVMLDEIINYVQSLQ 435
                       8*************************9....677*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474594.45E-17382453IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000836.11E-11382439No hitNo description
Gene3DG3DSA:4.10.280.104.7E-17384452IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.663384434IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000109.0E-6388435IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003535.5E-10390440IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 579 aa     Download sequence    Send to blast
MEKDKVLMAE GLNRTAAPPT WNSCSFGMDM QTNELNCATE QVGSCFFNPN WDKSMDQSDP  60
FESALSSMVS SPAASNAGST LPGFGENVMI RELIGRLGNI CNSGDISPQS FVKPNNNTNS  120
GNTSCYSTPL NSPPKLNLSM VESQIRGNLN LPGLGNQLPN HPSLAPFSAD PGFAERAARF  180
SCFSTTSRNF GGLNGQLGLT ETELPQRLRP RMDSVKLSRV SSNQSIKVTG SQVNVPESNK  240
NSPQEGSSGS DKKNSRLSRS SSPENAEFGD SKEESSVSEQ IPGGDSSIKV QNDANARKRK  300
SIPRGKAKET PSPVAADAKV APENGESTAK RSKQEEAAGN AKEKTEQNGN GKAANDGNQK  360
QGKENSKPPE PPKDYIHVRA RRGQATDSHS LAERVRREKI SERMKFLQDL VPGCNKVTGK  420
AVMLDEIINY VQSLQRQVEF LSMKLSTVNP RMDINMEALL SKDMFRSGGS LPHALYSMDS  480
SAPAFPFGYQ LQQQALPLHS GISNNIETQF SMNPLNAVLR KTQGVQLPPI DGFTDANPQV  540
ASFWEDDLQS IVQMGFGQNQ AQSYQGSMAA AGQVKIEL*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007034153.20.0PREDICTED: transcription factor bHLH62
TrEMBLA0A061ERY90.0A0A061ERY9_THECC; Basic helix-loop-helix DNA-binding superfamily protein isoform 1
STRINGEOY050790.0(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM23322775
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G07340.13e-99bHLH family protein
Publications ? help Back to Top
  1. Motamayor JC, et al.
    The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color.
    Genome Biol., 2013. 14(6): p. r53
    [PMID:23731509]