PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Thecc1EG020127t1

Common Name

TCM_020127

Organism

Theobroma cacao

Taxonomic ID

3641

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma

Family

NAC

Protein Properties

Length: 311aa MW: 36473 Da PI: 6.3489

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Thecc1EG020127t1	genome	CGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	80.1	4.9e-25	3	160	2	128
NAM 2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk..................................kvkaeekewyf 60 ++GfrF Ptdeel+ e L +kv+g+k+ l+++i e +iy++eP+dL+ +++ +++e y+ Thecc1EG020127t1 3 QAGFRFCPTDEELI-EILIQKVSGNKTMLFDFIVERNIYELEPQDLQYlhsflllysyinflitsnanhksffvwflyiwiqNAALNNNERYY 94 58**********.88999**9999************95689****9999776666666666665554322235556666 PP NAM 61 Fskrdkkyatgkrknr.atksgyWkatgkdkevlskkgelvglkktLvfy.....kgrapkgektdWvmheyrl 128 ++kr+++ +r + +g Wkat + k++ + +g +vg k+ L+f+ + +++++ ktdW+mhey+l Thecc1EG020127t1 95 YCKRETE-------SReVSGRGWWKATSHVKTISA-NGLVVGYKRPLTFHrfrdhERKRKDAIKTDWIMHEYAL 160 6666553.......3336789********99.999*******7776556777788*******97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51005	29.643	2	175	IPR003441	NAC domain
Pfam	PF02365	9.6E-16	4	160	IPR003441	NAC domain
SuperFamily	SSF101941	2.62E-27	4	50	IPR003441	NAC domain
SuperFamily	SSF101941	2.62E-27	81	175	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 311 aa Download sequence Send to blast
MFQAGFRFCP TDEELIEILI QKVSGNKTML FDFIVERNIY ELEPQDLQYL HSFLLLYSYI 60 NFLITSNANH KSFFVWFLYI WIQNAALNNN ERYYYCKRET ESREVSGRGW WKATSHVKTI 120 SANGLVVGYK RPLTFHRFRD HERKRKDAIK TDWIMHEYAL DSIPTDWRLC KIKYKGKERL 180 EEDMENIRNR SCPMSLEAAG GCSSSTNPMQ LDQFAFEEQQ LQPQPSLPPL TLINNDYENY 240 FGSNSNTRFH ISSGEQQQGM AQPITSFDPS WIPLLAAPSH IASQQHNQSA EPREAQFPFP 300 DLWSSWENWH *

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017974574.1	0.0	PREDICTED: transcription factor JUNGBRUNNEN 1
TrEMBL	A0A061EK04	0.0	A0A061EK04_THECC; NAC domain containing protein 94, putative
STRING	EOY05003	0.0	(Theobroma cacao)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM16224	6	14

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G27410.3	2e-17	NAC family protein

Link Out ? help Back to Top
Phytozome	Thecc1EG020127t1
Entrez Gene	18602554

Publications ? help Back to Top
Motamayor JC, et al. The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color. Genome Biol., 2013. 14(6): p. r53 [PMID:23731509]