PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thecc1EG020125t1
Common NameTCM_020125
Organism
Theobroma cacao
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
Family NAC
Protein Properties Length: 288aa    MW: 33399.6 Da    PI: 6.8775
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thecc1EG020125t1genomeCGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM90.43.1e-2841283128
               NAM   3 pGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp..kkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevl 93 
                        GfrF+Ptdeel+ e L +kv+g+ +  +++i e +iy++eP++L+  ++v+ +++e y+++kr+  +      + +  +g Wkat + k++ 
  Thecc1EG020125t1   4 TGFRFNPTDEELI-EILIEKVSGNITMSFDFIVERNIYELEPQNLQwiQSVALNNNERYYYCKREGDS------REVSGRGWWKATSHVKTIS 89 
                       7************.7799999999877779***************96446666889*******98753......347789************9 PP

               NAM  94 skkgelvglkktLvfy....kgrapkge.ktdWvmheyrl 128
                       + +g++vg k+ L+f+    ++r++kg  ktdW+mhey+l
  Thecc1EG020125t1  90 A-NGRVVGYKRPLTFHrfrdNERKRKGAiKTDWIMHEYAL 128
                       9.999***********7766344444434*********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100533.372143IPR003441NAC domain
SuperFamilySSF1019418.24E-344143IPR003441NAC domain
PfamPF023651.4E-164128IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 288 aa     Download sequence    Send to blast
MISTGFRFNP TDEELIEILI EKVSGNITMS FDFIVERNIY ELEPQNLQWI QSVALNNNER  60
YYYCKREGDS REVSGRGWWK ATSHVKTISA NGRVVGYKRP LTFHRFRDNE RKRKGAIKTD  120
WIMHEYALHS IPTDWRLCKI KYKGKERLEE DLENIRNSSC PMSLEAAGGC SSSINPMQLD  180
QFAFKEQQLQ PQPLLLPLTL INNDYENYFG SNSNSNTRFE ISVGVQQQGM EPISLFDPSW  240
MPLMATPSHI ASQQHKQSAE PREAQSPFPD LWSSWENWHR PPLSSKY*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A1e-16214615171Stress-induced transcription factor NAC1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007034076.20.0PREDICTED: putative NAC domain-containing protein 94
TrEMBLA0A061EKU80.0A0A061EKU8_THECC; NAC domain containing protein 94
STRINGEOY050020.0(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM16224614
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G39820.12e-20NAC domain containing protein 94
Publications ? help Back to Top
  1. Motamayor JC, et al.
    The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color.
    Genome Biol., 2013. 14(6): p. r53
    [PMID:23731509]