PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Thecc1EG020121t1

Common Name

TCM_020121

Organism

Theobroma cacao

Taxonomic ID

3641

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma

Family

NAC

Protein Properties

Length: 284aa MW: 33028.1 Da PI: 6.3998

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Thecc1EG020121t1	genome	CGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	93.3	3.9e-29	2	128	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp..kkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdke 91 +p+Gf+F Ptdeel+ + L +kv+g+ + +++i e +iyk+eP+dL+ ++++ +++e y+++kr++ + + + +g Wkat + k+ Thecc1EG020121t1 2 VPMGFKFCPTDEELI-QILIQKVSGNVMAPFDFIVERNIYKLEPQDLQwiQSAALNNNERYYYCKRESDS------REVSGRGWWKATSHVKT 87 599**********.7899***9999************9533444578899*98753......347789********* PP NAM 92 vlskkgelvglkktLvfy....kgrapkge.ktdWvmheyrl 128 + + +g++vg k+ L+f+ +gr++kg ktdW+mhey+l Thecc1EG020121t1 88 ISA-NGRVVGYKRPLTFHrfrdNGRKRKGAiKTDWIMHEYAL 128 99.999********7776688877755*******97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	1.07E-34	2	143	IPR003441	NAC domain
PROSITE profile	PS51005	34.27	2	143	IPR003441	NAC domain
Pfam	PF02365	2.4E-16	3	128	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 284 aa Download sequence Send to blast
MVPMGFKFCP TDEELIQILI QKVSGNVMAP FDFIVERNIY KLEPQDLQWI QSAALNNNER 60 YYYCKRESDS REVSGRGWWK ATSHVKTISA NGRVVGYKRP LTFHRFRDNG RKRKGAIKTD 120 WIMHEYALHS IPTDWRLCKI KYKGKERLEE DMENIRNSSC PMSLEATGGC ISSINPMQVD 180 QFACKEQQPQ PQQFLPPLTF INNEYENYFG SNSNSNSNVR FEISIGEQQQ QQEMEPISSF 240 DPSWMPLMAT PSHIASQQHN QSAETREDQS PFPDLWSSWE NWH*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
3ulx_A	2e-19	2	146	15	171	Stress-induced transcription factor NAC1
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_007034072.2	0.0	PREDICTED: putative NAC domain-containing protein 94
TrEMBL	A0A061EJZ8	0.0	A0A061EJZ8_THECC; NAC domain containing protein 94, putative
STRING	EOY04998	0.0	(Theobroma cacao)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM16224	6	14

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G39820.1	2e-22	NAC domain containing protein 94

Link Out ? help Back to Top
Phytozome	Thecc1EG020121t1
Entrez Gene	18602549

Publications ? help Back to Top
Motamayor JC, et al. The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color. Genome Biol., 2013. 14(6): p. r53 [PMID:23731509]