PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thecc1EG020066t1
Common NameTCM_020066
Organism
Theobroma cacao
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
Family bHLH
Protein Properties Length: 388aa    MW: 41768.7 Da    PI: 6.8429
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thecc1EG020066t1genomeCGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH35.71.6e-11279324655
                       HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
               HLH   6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                       +++Er RR ri  ++ +L+el+P+     +k  s a++L +Ave+Ik Lq
  Thecc1EG020066t1 279 SIAERERRTRISGKLKKLQELVPNM----DKQTSYADMLDLAVEHIKGLQ 324
                       689*********************7....688*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.056273323IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474596.54E-14276340IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.31E-11277328No hitNo description
Gene3DG3DSA:4.10.280.104.0E-12278334IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000106.3E-9279324IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.7E-12279329IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010119Biological Processregulation of stomatal movement
GO:0005829Cellular Componentcytosol
GO:0044212Molecular Functiontranscription regulatory region DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 388 aa     Download sequence    Send to blast
MYPSSSSSSS QKPMGHTGLT RYGSAPGSLL TTTVDAVIGA DPNHVGHYFT ADSSSLTSES  60
TCKVSSSNDP QEPKAAAAAP PHGSYPGTNS SSLLRQRSSP AGFLSHVTTE NDYYVESLDM  120
IMQSELNALI AGFSVTRGTG NYSSQGGANG GHRVSRLKSQ LSFTRQDSLS QISEVSENLV  180
DGVSTSSNHQ NAAHSFAAAG FGMDSWDNTN SIVFSAPPSK RAKNIDGDFY NCLNALETQF  240
SLPQTTLEMA TVEKLLHIPE DSVPCKIRAK RGCATHPRSI AERERRTRIS GKLKKLQELV  300
PNMDKQTSYA DMLDLAVEHI KGLQNEVQVF LGDAQTLGMF HYQALSSGPP IRIMILLLSL  360
TYLPTSWSIE IKFTMGNINH LTTLELG*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017975217.10.0PREDICTED: transcription factor bHLH128
SwissprotQ8H1021e-86BH128_ARATH; Transcription factor bHLH128
TrEMBLA0A061EKJ90.0A0A061EKJ9_THECC; Basic helix-loop-helix DNA-binding superfamily protein, putative
STRINGEOY049220.0(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM117772631
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G05805.14e-88bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Motamayor JC, et al.
    The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color.
    Genome Biol., 2013. 14(6): p. r53
    [PMID:23731509]