PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Thecc1EG020038t2 | ||||||||
Common Name | TCM_020038 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
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Family | FAR1 | ||||||||
Protein Properties | Length: 246aa MW: 28131.9 Da PI: 6.3217 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 84.9 | 1.3e-26 | 77 | 167 | 1 | 90 |
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerr..traetrtgCkaklkvkkekdgkwevtkleleHnHela 90 +fY eYAk++GF++r+++ ++s +n i+ r+fvCs+eg+r+ ++++++ r +r+ tr gCka++++ ++ gkw vtk++ eHnH+l+ Thecc1EG020038t2 77 DFYFEYAKRTGFTIRTNRIRHSLKNMAIIGRDFVCSREGFRAAKHTHRK-DRVlpPRPITREGCKAMIRLAARDGGKWIVTKFVREHNHKLM 167 6*****************************************9998822.222459**********************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03101 | 2.7E-24 | 77 | 167 | IPR004330 | FAR1 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0016021 | Cellular Component | integral component of membrane |
Sequence ? help Back to Top |
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Protein Sequence Length: 246 aa Download sequence Send to blast |
MAGAADPHDF SDSDRSSEDE TAVNTAEYEG MGPELLQGHN VMNNEFIALE QSGKALDIGN 60 LEPYNGMTFQ SLDDARDFYF EYAKRTGFTI RTNRIRHSLK NMAIIGRDFV CSREGFRAAK 120 HTHRKDRVLP PRPITREGCK AMIRLAARDG GKWIVTKFVR EHNHKLMTLC KFPGELPTIN 180 MLSEEEKDKK IQDLTSELQR EKERSAAFRQ QLQKILKDLE EHAEFMSIRV EDIVDSLKKV 240 ELDDV* |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_007033949.1 | 0.0 | PREDICTED: protein FAR-RED ELONGATED HYPOCOTYL 3 | ||||
Refseq | XP_017974711.1 | 0.0 | PREDICTED: protein FAR-RED ELONGATED HYPOCOTYL 3 | ||||
TrEMBL | A0A061EIM3 | 0.0 | A0A061EIM3_THECC; Far-red impaired responsive family protein isoform 2 | ||||
STRING | Gorai.011G142100.1 | 1e-148 | (Gossypium raimondii) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G07500.1 | 3e-42 | FAR1 family protein |
Link Out ? help Back to Top | |
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Phytozome | Thecc1EG020038t2 |
Entrez Gene | 18602485 |
Publications ? help Back to Top | |||
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