PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Thecc1EG020033t2 | ||||||||
Common Name | TCM_020033 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
|
||||||||
Family | FAR1 | ||||||||
Protein Properties | Length: 217aa MW: 24976.3 Da PI: 6.3996 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 89.4 | 5e-28 | 66 | 153 | 2 | 89 |
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHel 89 fY+eYA++vGF +r+ +s+ks+ +g+i++r++ C+keg++ +++k+ + + r+r+++r gC a++ vk+ek g+w+++k+++eH+H+l Thecc1EG020033t2 66 FYDEYARRVGFLTRIISSRKSELDGSIIHRRLACNKEGFNLNRQKNGRVQIRKRESKREGCMARMIVKREKPGRWVISKFVKEHTHPL 153 9*********************************************99999***********************************99 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03101 | 6.3E-25 | 66 | 154 | IPR004330 | FAR1 DNA binding domain |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 217 aa Download sequence Send to blast |
MDHKIVIRES CIESESDVCE ADTNKEETFL ITESCTGDES GLCELNLNQE PHEGMLFESV 60 QAAKAFYDEY ARRVGFLTRI ISSRKSELDG SIIHRRLACN KEGFNLNRQK NGRVQIRKRE 120 SKREGCMARM IVKREKPGRW VISKFVKEHT HPLLITSVNG QPNPMQQDDK DKKIQELSSE 180 LVNANQELMA CREQLCAFMN YIEEHTEHLS KTVEDR* |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Putative transcription activator involved in regulating light control of development. |
Regulation -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | INDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269|PubMed:15591448}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_017974714.1 | 1e-161 | PREDICTED: protein FAR1-RELATED SEQUENCE 5 | ||||
Swissprot | Q9SZL8 | 1e-23 | FRS5_ARATH; Protein FAR1-RELATED SEQUENCE 5 | ||||
TrEMBL | A0A061EKE5 | 1e-160 | A0A061EKE5_THECC; Far-red impaired responsive family protein isoform 2 | ||||
STRING | EOY04866 | 1e-158 | (Theobroma cacao) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT2G43280.1 | 2e-49 | FAR1 family protein |
Link Out ? help Back to Top | |
---|---|
Phytozome | Thecc1EG020033t2 |
Entrez Gene | 18602481 |
Publications ? help Back to Top | |||
---|---|---|---|
|