PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Thecc1EG020030t1

Common Name

TCM_020030

Organism

Theobroma cacao

Taxonomic ID

3641

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma

Family

FAR1

Protein Properties

Length: 267aa MW: 30603.5 Da PI: 6.4268

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Thecc1EG020030t1	genome	CGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	81.9	1.1e-25	88	178	1	90
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerr..traetrtgCkaklkvkkekdgkwevtkleleHnHela 90 +fY +Y++++GF+vr++++++s+ n++++ ++fvCskeg+r+++ ++++ + + tr gC+a++++ +++ +kw+vtk+++ HnH+l+ Thecc1EG020030t1 88 EFYAAYGRRTGFTVRIHHNRRSRVNNQVIGQDFVCSKEGFRAKKYIYRKDR-VlpPPPITREGCQAMIRLALRDGAKWVVTKFVKGHNHKLM 178 6****************************************99883332.234899******************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	1.5E-22	88	178	IPR004330	FAR1 DNA binding domain

Sequence ? help Back to Top
Protein Sequence Length: 267 aa Download sequence Send to blast
MFQCFLQSTI GSMMDNQSSL EFDSDESDLD VRAEEHGQME DVLQKNLDFC VSEDEKLAEQ 60 SGGSLSHITD ALEPYMGMEF NSRDEAREFY AAYGRRTGFT VRIHHNRRSR VNNQVIGQDF 120 VCSKEGFRAK KYIYRKDRVL PPPPITREGC QAMIRLALRD GAKWVVTKFV KGHNHKLMSP 180 NKVPLRESGK HLVGEDEKDK RIRELSLELY NERQKCKRRC AAYEEQLNLI LKDLENHTAH 240 ISKTVADMVQ SIKEIEEEQS VSDGVG*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021291086.1	0.0	protein FAR1-RELATED SEQUENCE 6-like isoform X2
TrEMBL	A0A061EJ25	0.0	A0A061EJ25_THECC; Far-red impaired responsive family protein isoform 1
STRING	EOY04861	0.0	(Theobroma cacao)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM16529	7	11

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G43280.1	3e-42	FAR1 family protein

Link Out ? help Back to Top
Phytozome	Thecc1EG020030t1
Entrez Gene	18602479

Publications ? help Back to Top
Motamayor JC, et al. The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color. Genome Biol., 2013. 14(6): p. r53 [PMID:23731509]