PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thecc1EG020013t2
Common NameTCM_020013
Organism
Theobroma cacao
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
Family DBB
Protein Properties Length: 240aa    MW: 26409 Da    PI: 4.4368
Description DBB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thecc1EG020013t2genomeCGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box21.83.9e-07444539
          zf-B_box  5 kCpeHeekelqlfCedCqqllCedClleeHkg......Htv 39
                       C+ +e+ +++  C  ++  lC++C +e H        H++
  Thecc1EG020013t2  4 QCDVCERAPATVICCADEAALCAKCDVEVHAAnklaskHQR 44
                      7*****************************65667777765 PP
2zf-B_box29.12.1e-095394237
          zf-B_box  2 eerkCpeHeekelqlfCedCqqllCedClleeHkg......H 37
                      + + C+ ++ek + +fC +++ l+C+dC + +H+       H
  Thecc1EG020013t2 53 KLPPCDICQEKAAFIFCVEDRALFCQDCDEPIHSAgslsanH 94
                      6789*****************************656666666 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501199.314147IPR000315B-box-type zinc finger
CDDcd000218.03E-7347No hitNo description
SMARTSM003368.7E-10447IPR000315B-box-type zinc finger
PfamPF006431.6E-5444IPR000315B-box-type zinc finger
PROSITE profilePS501198.8875299IPR000315B-box-type zinc finger
SMARTSM003363.5E-145299IPR000315B-box-type zinc finger
PfamPF006436.3E-85395IPR000315B-box-type zinc finger
CDDcd000217.74E-85598No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010100Biological Processnegative regulation of photomorphogenesis
GO:0005622Cellular Componentintracellular
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 240 aa     Download sequence    Send to blast
MKIQCDVCER APATVICCAD EAALCAKCDV EVHAANKLAS KHQRLLLQCL SNKLPPCDIC  60
QEKAAFIFCV EDRALFCQDC DEPIHSAGSL SANHQRFLAT GIRVALSSSC NKNTEKSGLE  120
PPNKSAPQTS MKMPVQQQSN FTSSWAVDDL LQFSDIESPE KQKEQLELGE LEWLADIGLF  180
GEQLPQEALA PAEVPQLPIP QSANFNSCRP TRYSMPLKKP RIEIPEDDDD EFFTVPDLG*
Functional Description ? help Back to Top
Source Description
UniProtActs as negative regulator of seedling photomorphogenesis (PubMed:18540109). BBX25/STH and BBX24/STO function as transcriptional corepressors of HY5 activity, leading to the down-regulation of BBX22 expression. BBX25/STH acts additively with BBX24/STO during de-etiolation and the hypocotyl shade avoidance response (PubMed:23624715). {ECO:0000269|PubMed:18540109, ECO:0000269|PubMed:23624715}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007033917.21e-174PREDICTED: B-box zinc finger protein 25 isoform X1
SwissprotQ9SID11e-100BBX25_ARATH; B-box zinc finger protein 25
TrEMBLA0A061EJL31e-174A0A061EJL3_THECC; COL domain class transcription factor isoform 2
STRINGEOY048431e-175(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM27112767
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G31380.19e-87salt tolerance homologue
Publications ? help Back to Top
  1. Motamayor JC, et al.
    The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color.
    Genome Biol., 2013. 14(6): p. r53
    [PMID:23731509]
  2. Gangappa SN,Holm M,Botto JF
    Molecular interactions of BBX24 and BBX25 with HYH, HY5 HOMOLOG, to modulate Arabidopsis seedling development.
    Plant Signal Behav, 2014.
    [PMID:23733077]
  3. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  4. Zhang X,Lin R
    Light signaling differentially regulates the expression of group IV of the B-box zinc finger family.
    Plant Signal Behav, 2017. 12(9): p. e1365213
    [PMID:28922622]