PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thecc1EG019998t1
Common NameTCM_019998
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
Family bZIP
Protein Properties Length: 413aa    MW: 44764.8 Da    PI: 6.5196
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thecc1EG019998t1genomeCGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_131.44.1e-10215273563
                       CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
            bZIP_1   5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63 
                       kr++r   NR +A rs +RK  +i+eLe+kv++L++e ++L  +l  l+     l++e+
  Thecc1EG019998t1 215 KRAKRIWANRQSAARSKERKMRYIAELERKVQTLQTEATSLSAQLTLLQRDTNGLTAEN 273
                       9*********************************************9998888777776 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003389.8E-16211275IPR004827Basic-leucine zipper domain
PROSITE profilePS5021710.932213276IPR004827Basic-leucine zipper domain
SuperFamilySSF579599.85E-11215266No hitNo description
PfamPF001709.6E-9215269IPR004827Basic-leucine zipper domain
Gene3DG3DSA:1.20.5.1701.6E-10215269No hitNo description
CDDcd147031.50E-24216265No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 413 aa     Download sequence    Send to blast
MEKDKTPGLP PPSGRFSGFS SGGNAPNTFN VKSETGSFGQ TSEPNRFSHD VSKMPDNPPK  60
NLGHRRAHSE ILTLPDDISF DSDLGVVGAA DGPSYSDETE EDLLSMYLDM DKFNSSSATS  120
AFQVGESSVA APAAAPVPAV GVGVGTGMLA GENVSVGVGS SEKPRVRHQH SQSMDGSTSI  180
KPEMLMSGSE EVSPADSKKA ISAAKLAELA LIDPKRAKRI WANRQSAARS KERKMRYIAE  240
LERKVQTLQT EATSLSAQLT LLQRDTNGLT AENSELKLRL QTMEQQVHLQ DALNDALKEE  300
IQHLKVLTGQ SMPNGGPMMN FTSFGASQQY YPNNPAMHTL LTAQQFQQLQ INSKKHQHQF  360
QQHQLHQLQQ QQLQQQQEQP QQQSGEIKAR GSMPSPSQKD GSLDVSSTAS KD*
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor with an activatory role.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00126DAPTransfer from AT1G06070Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007033903.20.0PREDICTED: probable transcription factor PosF21
SwissprotQ040881e-156POF21_ARATH; Probable transcription factor PosF21
TrEMBLA0A061ER890.0A0A061ER89_THECC; Basic-leucine zipper transcription factor family protein
STRINGEOY048290.0(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM24452772
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G06070.11e-160bZIP family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Motamayor JC, et al.
    The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color.
    Genome Biol., 2013. 14(6): p. r53
    [PMID:23731509]
  3. Xu C, et al.
    Control of auxin-induced callus formation by bZIP59-LBD complex in Arabidopsis regeneration.
    Nat Plants, 2018. 4(2): p. 108-115
    [PMID:29358751]