PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Thecc1EG019949t4

Common Name

TCM_019949

Organism

Theobroma cacao

Taxonomic ID

3641

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma

Family

Nin-like

Protein Properties

Length: 959aa MW: 104696 Da PI: 4.9203

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Thecc1EG019949t4	genome	CGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	92.8	2.5e-29	553	604	1	52
RWP-RK 1 aekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 aek++sl++l++yFs+++kdAAk++gvc+T+LKriCRq+GI+RWP+Rki+++ Thecc1EG019949t4 553 AEKNVSLSVLQQYFSGSLKDAAKSIGVCPTTLKRICRQHGISRWPSRKINKV 604 589***********************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	17.052	536	624	IPR003035	RWP-RK domain
Pfam	PF02042	2.5E-26	556	604	IPR003035	RWP-RK domain
SuperFamily	SSF54277	2.13E-22	854	942	No hit	No description
PROSITE profile	PS51745	20.626	858	940	IPR000270	PB1 domain
Gene3D	G3DSA:3.10.20.240	2.7E-25	858	940	No hit	No description
SMART	SM00666	1.0E-22	858	940	IPR000270	PB1 domain
Pfam	PF00564	8.8E-18	859	939	IPR000270	PB1 domain
CDD	cd06407	3.30E-30	859	939	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005515	Molecular Function	protein binding

Sequence ? help Back to Top
Protein Sequence Length: 959 aa Download sequence Send to blast
MNFDSYAGWC NSPAATDQMF ASFGLSSYPS FPYASLDSLN ITEQSSGTFV EGGDALSGMG 60 GSYNCVDRMV CQQTDAQFGN PLDSTDTDEQ GVRRNNGGNR QNNTSDVANS LISRPIGQSL 120 DEKMLRALSL FKESSGGGIL AQVWVPVKHG DQYMLTTSDQ PYLLDQILSG YREVSRTYIF 180 SAELKLGSFP GLPGRVFISR VPEWTSNVTH YSEDEYLRFS HAVNHKVRGS IALPVFEPLE 240 MSCCAVLELV TVKEKPNFDA EMENVCLALQ AVNLRTTAPP RLLPQCLSRN QRAALAEITD 300 VLRAVCHAHR LPLALTWIPC NYAEEAVDEI IKVRVREGNK GWDGKCILCI EDTACYVNDT 360 EMQDFVHACA AHYLEEGQGI AGKALQSNHP FFSSDVKTYD ISDYPLVHHA RKFNLNAAVA 420 IRLRSTYTGD DDYILEFFLP INMKGSSEQQ LLLNNLSGTM QRICRSLRTV SDAEIVEGSK 480 VEFQRGTVPN FPPMSMSRRS SETALSAGSD MNSNDRIPLN VSNSRSDGKE ADGPPEQAMS 540 GPRRQMEKKR STAEKNVSLS VLQQYFSGSL KDAAKSIGVC PTTLKRICRQ HGISRWPSRK 600 INKVNRSLRK IQTVLDSVQG VEGGLKFDPA TGGFVAAGTI IQEFDSQKTL IFSENNLPVR 660 TPEPVNQEKP SAPLASCPDG ENSVVKLEED ECSFGGNNRG AAMSVVIPST CQELKKSSIP 720 SIDCSEDSKS VALDAGSFQA ASIGPAPWTC LENVTMGSYL PEGCDKWGLN KVNLKLEDSD 780 CHFVSRSSSS LAGADEMDAG MEGDDGIVEH NHQPTSSSMT DSSNGSGSML HGSSSSSQSF 840 EEAKNSKVKT ICVDSSSKIT VKATYKEDTV RFKFEPSAGC FQLYEEVATR FKIQNGTFQL 900 KYLDDEEEWV MLVSDSDLQE CLEILECVGT RNVKFQVRDV PCATGSSGSS NCFLGGGS*

Sequence ? help Back to Top

Protein Sequence Length: 959 aa Download sequence Send to blast

MNFDSYAGWC NSPAATDQMF ASFGLSSYPS FPYASLDSLN ITEQSSGTFV EGGDALSGMG  60
GSYNCVDRMV CQQTDAQFGN PLDSTDTDEQ GVRRNNGGNR QNNTSDVANS LISRPIGQSL  120
DEKMLRALSL FKESSGGGIL AQVWVPVKHG DQYMLTTSDQ PYLLDQILSG YREVSRTYIF  180
SAELKLGSFP GLPGRVFISR VPEWTSNVTH YSEDEYLRFS HAVNHKVRGS IALPVFEPLE  240
MSCCAVLELV TVKEKPNFDA EMENVCLALQ AVNLRTTAPP RLLPQCLSRN QRAALAEITD  300
VLRAVCHAHR LPLALTWIPC NYAEEAVDEI IKVRVREGNK GWDGKCILCI EDTACYVNDT  360
EMQDFVHACA AHYLEEGQGI AGKALQSNHP FFSSDVKTYD ISDYPLVHHA RKFNLNAAVA  420
IRLRSTYTGD DDYILEFFLP INMKGSSEQQ LLLNNLSGTM QRICRSLRTV SDAEIVEGSK  480
VEFQRGTVPN FPPMSMSRRS SETALSAGSD MNSNDRIPLN VSNSRSDGKE ADGPPEQAMS  540
GPRRQMEKKR STAEKNVSLS VLQQYFSGSL KDAAKSIGVC PTTLKRICRQ HGISRWPSRK  600
INKVNRSLRK IQTVLDSVQG VEGGLKFDPA TGGFVAAGTI IQEFDSQKTL IFSENNLPVR  660
TPEPVNQEKP SAPLASCPDG ENSVVKLEED ECSFGGNNRG AAMSVVIPST CQELKKSSIP  720
SIDCSEDSKS VALDAGSFQA ASIGPAPWTC LENVTMGSYL PEGCDKWGLN KVNLKLEDSD  780
CHFVSRSSSS LAGADEMDAG MEGDDGIVEH NHQPTSSSMT DSSNGSGSML HGSSSSSQSF  840
EEAKNSKVKT ICVDSSSKIT VKATYKEDTV RFKFEPSAGC FQLYEEVATR FKIQNGTFQL  900
KYLDDEEEWV MLVSDSDLQE CLEILECVGT RNVKFQVRDV PCATGSSGSS NCFLGGGS*

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. {ECO:0000250}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017975334.1	0.0	PREDICTED: protein NLP9
Refseq	XP_017975335.1	0.0	PREDICTED: protein NLP9
Swissprot	O22864	0.0	NLP8_ARATH; Protein NLP8
TrEMBL	A0A061EK60	0.0	A0A061EK60_THECC; Plant regulator RWP-RK family protein, putative isoform 4
STRING	EOY04774	0.0	(Theobroma cacao)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G59580.2	0.0	Nin-like family protein

Link Out ? help Back to Top
Phytozome	Thecc1EG019949t4
Entrez Gene	18602418

Publications ? help Back to Top
Motamayor JC, et al. The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color. Genome Biol., 2013. 14(6): p. r53 [PMID:23731509] Yan D, et al. NIN-like protein 8 is a master regulator of nitrate-promoted seed germination in Arabidopsis. Nat Commun, 2016. 7: p. 13179 [PMID:27731416]