PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Thecc1EG019949t3

Common Name

TCM_019949

Organism

Theobroma cacao

Taxonomic ID

3641

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma

Family

Nin-like

Protein Properties

Length: 895aa MW: 97878.1 Da PI: 5.2784

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Thecc1EG019949t3	genome	CGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	92.9	2.3e-29	489	540	1	52
RWP-RK 1 aekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 aek++sl++l++yFs+++kdAAk++gvc+T+LKriCRq+GI+RWP+Rki+++ Thecc1EG019949t3 489 AEKNVSLSVLQQYFSGSLKDAAKSIGVCPTTLKRICRQHGISRWPSRKINKV 540 589***********************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	17.052	472	560	IPR003035	RWP-RK domain
Pfam	PF02042	2.3E-26	492	540	IPR003035	RWP-RK domain
SuperFamily	SSF54277	1.93E-22	790	878	No hit	No description
PROSITE profile	PS51745	20.626	794	876	IPR000270	PB1 domain
SMART	SM00666	1.0E-22	794	876	IPR000270	PB1 domain
Gene3D	G3DSA:3.10.20.240	2.5E-25	794	876	No hit	No description
CDD	cd06407	4.68E-30	795	875	No hit	No description
Pfam	PF00564	8.1E-18	795	875	IPR000270	PB1 domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005515	Molecular Function	protein binding

Sequence ? help Back to Top
Protein Sequence Length: 895 aa Download sequence Send to blast
MLGGVTALQL QIRCLPPSDS TDTDEQGVRR NNGGNRQNNT SDVANSLISR PIGQSLDEKM 60 LRALSLFKES SGGGILAQVW VPVKHGDQYM LTTSDQPYLL DQILSGYREV SRTYIFSAEL 120 KLGSFPGLPG RVFISRVPEW TSNVTHYSED EYLRFSHAVN HKVRGSIALP VFEPLEMSCC 180 AVLELVTVKE KPNFDAEMEN VCLALQAVNL RTTAPPRLLP QCLSRNQRAA LAEITDVLRA 240 VCHAHRLPLA LTWIPCNYAE EAVDEIIKVR VREGNKGWDG KCILCIEDTA CYVNDTEMQD 300 FVHACAAHYL EEGQGIAGKA LQSNHPFFSS DVKTYDISDY PLVHHARKFN LNAAVAIRLR 360 STYTGDDDYI LEFFLPINMK GSSEQQLLLN NLSGTMQRIC RSLRTVSDAE IVEGSKVEFQ 420 RGTVPNFPPM SMSRRSSETA LSAGSDMNSN DRIPLNVSNS RSDGKEADGP PEQAMSGPRR 480 QMEKKRSTAE KNVSLSVLQQ YFSGSLKDAA KSIGVCPTTL KRICRQHGIS RWPSRKINKV 540 NRSLRKIQTV LDSVQGVEGG LKFDPATGGF VAAGTIIQEF DSQKTLIFSE NNLPVRTPEP 600 VNQEKPSAPL ASCPDGENSV VKLEEDECSF GGNNRGAAMS VVIPSTCQEL KKSSIPSIDC 660 SEDSKSVALD AGSFQAASIG PAPWTCLENV TMGSYLPEGC DKWGLNKVNL KLEDSDCHFV 720 SRSSSSLAGA DEMDAGMEGD DGIVEHNHQP TSSSMTDSSN GSGSMLHGSS SSSQSFEEAK 780 NSKVKTICVD SSSKITVKAT YKEDTVRFKF EPSAGCFQLY EEVATRFKIQ NGTFQLKYLD 840 DEEEWVMLVS DSDLQECLEI LECVGTRNVK FQVRDVPCAT GSSGSSNCFL GGGS*

Sequence ? help Back to Top

Protein Sequence Length: 895 aa Download sequence Send to blast

MLGGVTALQL QIRCLPPSDS TDTDEQGVRR NNGGNRQNNT SDVANSLISR PIGQSLDEKM  60
LRALSLFKES SGGGILAQVW VPVKHGDQYM LTTSDQPYLL DQILSGYREV SRTYIFSAEL  120
KLGSFPGLPG RVFISRVPEW TSNVTHYSED EYLRFSHAVN HKVRGSIALP VFEPLEMSCC  180
AVLELVTVKE KPNFDAEMEN VCLALQAVNL RTTAPPRLLP QCLSRNQRAA LAEITDVLRA  240
VCHAHRLPLA LTWIPCNYAE EAVDEIIKVR VREGNKGWDG KCILCIEDTA CYVNDTEMQD  300
FVHACAAHYL EEGQGIAGKA LQSNHPFFSS DVKTYDISDY PLVHHARKFN LNAAVAIRLR  360
STYTGDDDYI LEFFLPINMK GSSEQQLLLN NLSGTMQRIC RSLRTVSDAE IVEGSKVEFQ  420
RGTVPNFPPM SMSRRSSETA LSAGSDMNSN DRIPLNVSNS RSDGKEADGP PEQAMSGPRR  480
QMEKKRSTAE KNVSLSVLQQ YFSGSLKDAA KSIGVCPTTL KRICRQHGIS RWPSRKINKV  540
NRSLRKIQTV LDSVQGVEGG LKFDPATGGF VAAGTIIQEF DSQKTLIFSE NNLPVRTPEP  600
VNQEKPSAPL ASCPDGENSV VKLEEDECSF GGNNRGAAMS VVIPSTCQEL KKSSIPSIDC  660
SEDSKSVALD AGSFQAASIG PAPWTCLENV TMGSYLPEGC DKWGLNKVNL KLEDSDCHFV  720
SRSSSSLAGA DEMDAGMEGD DGIVEHNHQP TSSSMTDSSN GSGSMLHGSS SSSQSFEEAK  780
NSKVKTICVD SSSKITVKAT YKEDTVRFKF EPSAGCFQLY EEVATRFKIQ NGTFQLKYLD  840
DEEEWVMLVS DSDLQECLEI LECVGTRNVK FQVRDVPCAT GSSGSSNCFL GGGS*

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. {ECO:0000250}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017975334.1	0.0	PREDICTED: protein NLP9
Refseq	XP_017975335.1	0.0	PREDICTED: protein NLP9
Swissprot	Q9M1B0	0.0	NLP9_ARATH; Protein NLP9
TrEMBL	A0A061EIU7	0.0	A0A061EIU7_THECC; Plant regulator RWP-RK family protein, putative isoform 3
STRING	EOY04774	0.0	(Theobroma cacao)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G59580.2	0.0	Nin-like family protein

Link Out ? help Back to Top
Phytozome	Thecc1EG019949t3
Entrez Gene	18602418

Publications ? help Back to Top
Motamayor JC, et al. The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color. Genome Biol., 2013. 14(6): p. r53 [PMID:23731509]