PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Thecc1EG019949t2

Common Name

TCM_019949

Organism

Theobroma cacao

Taxonomic ID

3641

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma

Family

Nin-like

Protein Properties

Length: 931aa MW: 101717 Da PI: 5.0249

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Thecc1EG019949t2	genome	CGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	92.8	2.5e-29	525	576	1	52
RWP-RK 1 aekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 aek++sl++l++yFs+++kdAAk++gvc+T+LKriCRq+GI+RWP+Rki+++ Thecc1EG019949t2 525 AEKNVSLSVLQQYFSGSLKDAAKSIGVCPTTLKRICRQHGISRWPSRKINKV 576 589***********************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	17.052	508	596	IPR003035	RWP-RK domain
Pfam	PF02042	2.4E-26	528	576	IPR003035	RWP-RK domain
SuperFamily	SSF54277	2.03E-22	826	914	No hit	No description
SMART	SM00666	1.0E-22	830	912	IPR000270	PB1 domain
Gene3D	G3DSA:3.10.20.240	2.6E-25	830	912	No hit	No description
PROSITE profile	PS51745	20.626	830	912	IPR000270	PB1 domain
Pfam	PF00564	8.5E-18	831	911	IPR000270	PB1 domain
CDD	cd06407	3.82E-30	831	911	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005515	Molecular Function	protein binding

Sequence ? help Back to Top
Protein Sequence Length: 931 aa Download sequence Send to blast
MNFDSYAGWC NSPAATDQMF ASFGGDALSG MGGSYNCVDR MVCQQTDAQF GNPLDSTDTD 60 EQGVRRNNGG NRQNNTSDVA NSLISRPIGQ SLDEKMLRAL SLFKESSGGG ILAQVWVPVK 120 HGDQYMLTTS DQPYLLDQIL SGYREVSRTY IFSAELKLGS FPGLPGRVFI SRVPEWTSNV 180 THYSEDEYLR FSHAVNHKVR GSIALPVFEP LEMSCCAVLE LVTVKEKPNF DAEMENVCLA 240 LQAVNLRTTA PPRLLPQCLS RNQRAALAEI TDVLRAVCHA HRLPLALTWI PCNYAEEAVD 300 EIIKVRVREG NKGWDGKCIL CIEDTACYVN DTEMQDFVHA CAAHYLEEGQ GIAGKALQSN 360 HPFFSSDVKT YDISDYPLVH HARKFNLNAA VAIRLRSTYT GDDDYILEFF LPINMKGSSE 420 QQLLLNNLSG TMQRICRSLR TVSDAEIVEG SKVEFQRGTV PNFPPMSMSR RSSETALSAG 480 SDMNSNDRIP LNVSNSRSDG KEADGPPEQA MSGPRRQMEK KRSTAEKNVS LSVLQQYFSG 540 SLKDAAKSIG VCPTTLKRIC RQHGISRWPS RKINKVNRSL RKIQTVLDSV QGVEGGLKFD 600 PATGGFVAAG TIIQEFDSQK TLIFSENNLP VRTPEPVNQE KPSAPLASCP DGENSVVKLE 660 EDECSFGGNN RGAAMSVVIP STCQELKKSS IPSIDCSEDS KSVALDAGSF QAASIGPAPW 720 TCLENVTMGS YLPEGCDKWG LNKVNLKLED SDCHFVSRSS SSLAGADEMD AGMEGDDGIV 780 EHNHQPTSSS MTDSSNGSGS MLHGSSSSSQ SFEEAKNSKV KTICVDSSSK ITVKATYKED 840 TVRFKFEPSA GCFQLYEEVA TRFKIQNGTF QLKYLDDEEE WVMLVSDSDL QECLEILECV 900 GTRNVKFQVR DVPCATGSSG SSNCFLGGGS *

Sequence ? help Back to Top

Protein Sequence Length: 931 aa Download sequence Send to blast

MNFDSYAGWC NSPAATDQMF ASFGGDALSG MGGSYNCVDR MVCQQTDAQF GNPLDSTDTD  60
EQGVRRNNGG NRQNNTSDVA NSLISRPIGQ SLDEKMLRAL SLFKESSGGG ILAQVWVPVK  120
HGDQYMLTTS DQPYLLDQIL SGYREVSRTY IFSAELKLGS FPGLPGRVFI SRVPEWTSNV  180
THYSEDEYLR FSHAVNHKVR GSIALPVFEP LEMSCCAVLE LVTVKEKPNF DAEMENVCLA  240
LQAVNLRTTA PPRLLPQCLS RNQRAALAEI TDVLRAVCHA HRLPLALTWI PCNYAEEAVD  300
EIIKVRVREG NKGWDGKCIL CIEDTACYVN DTEMQDFVHA CAAHYLEEGQ GIAGKALQSN  360
HPFFSSDVKT YDISDYPLVH HARKFNLNAA VAIRLRSTYT GDDDYILEFF LPINMKGSSE  420
QQLLLNNLSG TMQRICRSLR TVSDAEIVEG SKVEFQRGTV PNFPPMSMSR RSSETALSAG  480
SDMNSNDRIP LNVSNSRSDG KEADGPPEQA MSGPRRQMEK KRSTAEKNVS LSVLQQYFSG  540
SLKDAAKSIG VCPTTLKRIC RQHGISRWPS RKINKVNRSL RKIQTVLDSV QGVEGGLKFD  600
PATGGFVAAG TIIQEFDSQK TLIFSENNLP VRTPEPVNQE KPSAPLASCP DGENSVVKLE  660
EDECSFGGNN RGAAMSVVIP STCQELKKSS IPSIDCSEDS KSVALDAGSF QAASIGPAPW  720
TCLENVTMGS YLPEGCDKWG LNKVNLKLED SDCHFVSRSS SSLAGADEMD AGMEGDDGIV  780
EHNHQPTSSS MTDSSNGSGS MLHGSSSSSQ SFEEAKNSKV KTICVDSSSK ITVKATYKED  840
TVRFKFEPSA GCFQLYEEVA TRFKIQNGTF QLKYLDDEEE WVMLVSDSDL QECLEILECV  900
GTRNVKFQVR DVPCATGSSG SSNCFLGGGS *

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. {ECO:0000250}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017975334.1	0.0	PREDICTED: protein NLP9
Refseq	XP_017975335.1	0.0	PREDICTED: protein NLP9
Swissprot	Q9M1B0	0.0	NLP9_ARATH; Protein NLP9
TrEMBL	A0A061EIE4	0.0	A0A061EIE4_THECC; Plant regulator RWP-RK family protein, putative isoform 2
STRING	EOY04774	0.0	(Theobroma cacao)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G59580.2	0.0	Nin-like family protein

Link Out ? help Back to Top
Phytozome	Thecc1EG019949t2
Entrez Gene	18602418

Publications ? help Back to Top
Motamayor JC, et al. The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color. Genome Biol., 2013. 14(6): p. r53 [PMID:23731509]