PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Thecc1EG019949t1

Common Name

TCM_019949

Organism

Theobroma cacao

Taxonomic ID

3641

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma

Family

Nin-like

Protein Properties

Length: 1005aa MW: 109716 Da PI: 4.8534

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Thecc1EG019949t1	genome	CGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	92.7	2.7e-29	599	650	1	52
RWP-RK 1 aekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 aek++sl++l++yFs+++kdAAk++gvc+T+LKriCRq+GI+RWP+Rki+++ Thecc1EG019949t1 599 AEKNVSLSVLQQYFSGSLKDAAKSIGVCPTTLKRICRQHGISRWPSRKINKV 650 589***********************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	17.052	582	670	IPR003035	RWP-RK domain
Pfam	PF02042	2.6E-26	602	650	IPR003035	RWP-RK domain
SuperFamily	SSF54277	2.26E-22	900	988	No hit	No description
SMART	SM00666	1.0E-22	904	986	IPR000270	PB1 domain
PROSITE profile	PS51745	20.626	904	986	IPR000270	PB1 domain
Gene3D	G3DSA:3.10.20.240	2.9E-25	904	986	No hit	No description
CDD	cd06407	2.70E-30	905	985	No hit	No description
Pfam	PF00564	9.4E-18	905	985	IPR000270	PB1 domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005515	Molecular Function	protein binding

Sequence ? help Back to Top
Protein Sequence Length: 1005 aa Download sequence Send to blast
MEYSLSSKEK GIGYWVPPRG PMEGGEQLGG STKNSISEDP FNFSELMNFD SYAGWCNSPA 60 ATDQMFASFG LSSYPSFPYA SLDSLNITEQ SSGTFVEGGD ALSGMGGSYN CVDRMVCQQT 120 DAQFGNPLDS TDTDEQGVRR NNGGNRQNNT SDVANSLISR PIGQSLDEKM LRALSLFKES 180 SGGGILAQVW VPVKHGDQYM LTTSDQPYLL DQILSGYREV SRTYIFSAEL KLGSFPGLPG 240 RVFISRVPEW TSNVTHYSED EYLRFSHAVN HKVRGSIALP VFEPLEMSCC AVLELVTVKE 300 KPNFDAEMEN VCLALQAVNL RTTAPPRLLP QCLSRNQRAA LAEITDVLRA VCHAHRLPLA 360 LTWIPCNYAE EAVDEIIKVR VREGNKGWDG KCILCIEDTA CYVNDTEMQD FVHACAAHYL 420 EEGQGIAGKA LQSNHPFFSS DVKTYDISDY PLVHHARKFN LNAAVAIRLR STYTGDDDYI 480 LEFFLPINMK GSSEQQLLLN NLSGTMQRIC RSLRTVSDAE IVEGSKVEFQ RGTVPNFPPM 540 SMSRRSSETA LSAGSDMNSN DRIPLNVSNS RSDGKEADGP PEQAMSGPRR QMEKKRSTAE 600 KNVSLSVLQQ YFSGSLKDAA KSIGVCPTTL KRICRQHGIS RWPSRKINKV NRSLRKIQTV 660 LDSVQGVEGG LKFDPATGGF VAAGTIIQEF DSQKTLIFSE NNLPVRTPEP VNQEKPSAPL 720 ASCPDGENSV VKLEEDECSF GGNNRGAAMS VVIPSTCQEL KKSSIPSIDC SEDSKSVALD 780 AGSFQAASIG PAPWTCLENV TMGSYLPEGC DKWGLNKVNL KLEDSDCHFV SRSSSSLAGA 840 DEMDAGMEGD DGIVEHNHQP TSSSMTDSSN GSGSMLHGSS SSSQSFEEAK NSKVKTICVD 900 SSSKITVKAT YKEDTVRFKF EPSAGCFQLY EEVATRFKIQ NGTFQLKYLD DEEEWVMLVS 960 DSDLQECLEI LECVGTRNVK FQVRDVPCAT GSSGSSNCFL GGGS*

Sequence ? help Back to Top

Protein Sequence Length: 1005 aa Download sequence Send to blast

MEYSLSSKEK GIGYWVPPRG PMEGGEQLGG STKNSISEDP FNFSELMNFD SYAGWCNSPA  60
ATDQMFASFG LSSYPSFPYA SLDSLNITEQ SSGTFVEGGD ALSGMGGSYN CVDRMVCQQT  120
DAQFGNPLDS TDTDEQGVRR NNGGNRQNNT SDVANSLISR PIGQSLDEKM LRALSLFKES  180
SGGGILAQVW VPVKHGDQYM LTTSDQPYLL DQILSGYREV SRTYIFSAEL KLGSFPGLPG  240
RVFISRVPEW TSNVTHYSED EYLRFSHAVN HKVRGSIALP VFEPLEMSCC AVLELVTVKE  300
KPNFDAEMEN VCLALQAVNL RTTAPPRLLP QCLSRNQRAA LAEITDVLRA VCHAHRLPLA  360
LTWIPCNYAE EAVDEIIKVR VREGNKGWDG KCILCIEDTA CYVNDTEMQD FVHACAAHYL  420
EEGQGIAGKA LQSNHPFFSS DVKTYDISDY PLVHHARKFN LNAAVAIRLR STYTGDDDYI  480
LEFFLPINMK GSSEQQLLLN NLSGTMQRIC RSLRTVSDAE IVEGSKVEFQ RGTVPNFPPM  540
SMSRRSSETA LSAGSDMNSN DRIPLNVSNS RSDGKEADGP PEQAMSGPRR QMEKKRSTAE  600
KNVSLSVLQQ YFSGSLKDAA KSIGVCPTTL KRICRQHGIS RWPSRKINKV NRSLRKIQTV  660
LDSVQGVEGG LKFDPATGGF VAAGTIIQEF DSQKTLIFSE NNLPVRTPEP VNQEKPSAPL  720
ASCPDGENSV VKLEEDECSF GGNNRGAAMS VVIPSTCQEL KKSSIPSIDC SEDSKSVALD  780
AGSFQAASIG PAPWTCLENV TMGSYLPEGC DKWGLNKVNL KLEDSDCHFV SRSSSSLAGA  840
DEMDAGMEGD DGIVEHNHQP TSSSMTDSSN GSGSMLHGSS SSSQSFEEAK NSKVKTICVD  900
SSSKITVKAT YKEDTVRFKF EPSAGCFQLY EEVATRFKIQ NGTFQLKYLD DEEEWVMLVS  960
DSDLQECLEI LECVGTRNVK FQVRDVPCAT GSSGSSNCFL GGGS*

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. {ECO:0000250}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017975334.1	0.0	PREDICTED: protein NLP9
Refseq	XP_017975335.1	0.0	PREDICTED: protein NLP9
Swissprot	O22864	0.0	NLP8_ARATH; Protein NLP8
TrEMBL	A0A061ER47	0.0	A0A061ER47_THECC; Plant regulator RWP-RK family protein, putative isoform 1
STRING	EOY04774	0.0	(Theobroma cacao)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM2299	27	68

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G43500.2	0.0	Nin-like family protein

Link Out ? help Back to Top
Phytozome	Thecc1EG019949t1
Entrez Gene	18602418

Publications ? help Back to Top
Motamayor JC, et al. The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color. Genome Biol., 2013. 14(6): p. r53 [PMID:23731509] Yan D, et al. NIN-like protein 8 is a master regulator of nitrate-promoted seed germination in Arabidopsis. Nat Commun, 2016. 7: p. 13179 [PMID:27731416]