PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thecc1EG019938t1
Common NameTCM_019938
Organism
Theobroma cacao
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
Family NAC
Protein Properties Length: 401aa    MW: 45560.2 Da    PI: 5.3086
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thecc1EG019938t1genomeCGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM965.7e-3051503128
               NAM   3 pGfrFhPtdeelvveyLkkkvegkkleleevikev.diykvePwdLp..kkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkev 92 
                       +G+ F+P+deel+  yL+  +++++ ++ ++i+++ di+++ePw+Lp  ++++++ + wyf  + + ky ++k  +ratk+gyWk tg+ +++
  Thecc1EG019938t1   5 KGYGFRPSDEELI-GYLQDITSDRDSPV-QFITQLeDICEFEPWELPglSALQQGCRVWYFIYSLNYKYGNSKLIKRATKEGYWKPTGRRRKI 95 
                       799**********.9**********999.7788877***********6447778888************************************ PP

               NAM  93 lsk.kgelvglkktLvfy..................kgrapkgektdWvmheyrl 128
                       +++ +++l+g k++Lvf+                  +++ ++ +k+ Wvmhey+l
  Thecc1EG019938t1  96 MATdTNALIGSKRSLVFHkghpkgktrtkpdnnknkTKHGSNRNKAVWVMHEYQL 150
                       *9866778**********77777766666655533223444445999******98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100531.5883169IPR003441NAC domain
SuperFamilySSF1019411.2E-305167IPR003441NAC domain
PfamPF023655.9E-165150IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 401 aa     Download sequence    Send to blast
MNNIKGYGFR PSDEELIGYL QDITSDRDSP VQFITQLEDI CEFEPWELPG LSALQQGCRV  60
WYFIYSLNYK YGNSKLIKRA TKEGYWKPTG RRRKIMATDT NALIGSKRSL VFHKGHPKGK  120
TRTKPDNNKN KTKHGSNRNK AVWVMHEYQL NAATPLNQET FFLGKLMKQS EEANIANNNG  180
ESSHHSPTNL RNQVAMNKIT EDQSDSSKPL AEVEVSNDSG GVQNQSSTND QDNDFQIDEI  240
YPQERCNRLT FVDDDEVSNL ISNLRNYAAV DAISRDMVDT SGWLITEQYT PNDGALVQNQ  300
FRTSEHGISS QNLIVADNNK TYPKTTSNQH YTAAENEGYN LPANLKNDEA QDFFPKDHFN  360
YVVSKFDELL PMIQTPNNCN PLQNQSSTNE QDAETRNYLL *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A3e-14115013140Stress-induced transcription factor NAC1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007033828.20.0PREDICTED: NAC domain-containing protein 4
TrEMBLA0A061ER280.0A0A061ER28_THECC; Nam protein 1, putative
STRINGEOY047540.0(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM1973146
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G49530.12e-26NAC domain containing protein 62
Publications ? help Back to Top
  1. Motamayor JC, et al.
    The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color.
    Genome Biol., 2013. 14(6): p. r53
    [PMID:23731509]