PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thecc1EG019871t1
Common NameTCM_019871
Organism
Theobroma cacao
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
Family bHLH
Protein Properties Length: 159aa    MW: 17480.1 Da    PI: 8.4816
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thecc1EG019871t1genomeCGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH15.72.7e-0548871054
                      HHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
               HLH 10 rrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54
                      + R +++ +++  L++l+ +      +K + a++L +A+eYI+ L
  Thecc1EG019871t1 48 KDRKEKLGERIVALQQLVSPY-----GKTDTASVLLEAMEYIRFL 87
                      6788889999999****9999.....9****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.280.106.7E-103799IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088812.0113887IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474592.36E-1240103IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003534.0E-44493IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.50E-54892No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 159 aa     Download sequence    Send to blast
MQTLCSCEEG IEIGKIMENK RGPCSVDHSS FTSLASKRQK ADLSISTKDR KEKLGERIVA  60
LQQLVSPYGK TDTASVLLEA MEYIRFLHEQ VKVLSAPYLQ TAPTNNMQDV EHYSLRSRGL  120
CLVPISCTAG VARSNGADIW APIKTTSPKF EKAISQFN*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007033749.11e-116PREDICTED: transcription factor bHLH113 isoform X1
SwissprotQ7XJU21e-62BH153_ARATH; Transcription factor bHLH153
TrEMBLA0A061EI751e-115A0A061EI75_THECC; Basic helix-loop-helix DNA-binding superfamily protein isoform 1
STRINGEOY046751e-116(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM33162761
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G05710.55e-65bHLH family protein
Publications ? help Back to Top
  1. Motamayor JC, et al.
    The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color.
    Genome Biol., 2013. 14(6): p. r53
    [PMID:23731509]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]