PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thecc1EG019701t3
Common NameTCM_019701
Organism
Theobroma cacao
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
Family B3
Protein Properties Length: 876aa    MW: 96267.5 Da    PI: 7.2166
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thecc1EG019701t3genomeCGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B359.36.8e-19321420198
                       EEEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSE CS
                B3   1 ffkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltledesgrsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvFkldgrse 89 
                       f+kvl+ sd+++ grlvlpk +ae++   ++++e+  l+++d +g++W +++++  +++s++yvl+ G     ++ +L++gD+v+F++++  e
  Thecc1EG019701t3 321 FEKVLSASDAGRIGRLVLPKACAEAYfpPISQPEGLPLKIQDVKGKEWMFQFRFwpNNNSRMYVLE-GVTPCIQSMQLQAGDTVTFSRMD-PE 411
                       99**************************555566778***************9989999999***9.********************876.77 PP

                       E..EEEEE- CS
                B3  90 felvvkvfr 98 
                       ++lv+++++
  Thecc1EG019701t3 412 GKLVMGFRK 420
                       777877776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.101.2E-30313427IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019367.32E-20318420IPR015300DNA-binding pseudobarrel domain
CDDcd100173.36E-23319420No hitNo description
PfamPF023621.9E-16321420IPR003340B3 DNA binding domain
PROSITE profilePS5086311.18321422IPR003340B3 DNA binding domain
SMARTSM010199.5E-22321421IPR003340B3 DNA binding domain
PROSITE profilePS5105014.086550600IPR011124Zinc finger, CW-type
PfamPF074963.3E-12555597IPR011124Zinc finger, CW-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010030Biological Processpositive regulation of seed germination
GO:2000034Biological Processregulation of seed maturation
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 876 aa     Download sequence    Send to blast
MASKSCMNGL CGASTSIEWR KGWTLRSGDF ANLCDKCGSA YEQLIFCDVF HSKDSGWREC  60
TSCGKRLHCG CIASRCLLEL LDSGGVNCIS CTKKSGFNPM IEDVKPNGFS IVKGDAGQLH  120
STSADNQLSG VSIENLKLMQ LTSNAESIGL RQMLQLHNDD ASGSLGQMKQ EEVLPPAREI  180
GSTCMSNINQ VSNGSVQSVK PNICKANIYD SLPQTNLSIS LGGPLGNQNV FPGSVVDEKG  240
KMSSVLQQAS KSRHLLPKPP KSVLATGLEV NAGMVPPIRV ARPPAEGRGR NQLLPRYWPR  300
ITDQELQQIS GDSNSTIVPL FEKVLSASDA GRIGRLVLPK ACAEAYFPPI SQPEGLPLKI  360
QDVKGKEWMF QFRFWPNNNS RMYVLEGVTP CIQSMQLQAG DTVTFSRMDP EGKLVMGFRK  420
ATNTAAAQSL KGSTDPHLNA LSKHLSSASG DISWHKSDKH EDRTREGLLL PSMLAPERKR  480
TRNIGSKSKR LLIDSQDALE LKLTWEEAQD LLRPPPSIKP SVVTIENHDF EEYDEPPVFG  540
KRSIFAVRSN GGQEQWAQCD SCSKWRRLPV DALLPPKWTC ADNNWDQSRS SCSAPDELTP  600
REVENLLRLN KDFKKRRIVA YHRPTQEHES SGLDALANAA ILGDNVDNLG TTSVATTTKH  660
PRHRPGCSCI VCIQPPSGKG KHKPTCTCNV CMTVKRRFKT LMMRKKKRQS EREAEIAQRN  720
QQAWGSREEA EVDSTSKHVS SHHDPSENEA RSVNELESKS QGHNLPPKVV ESNKGQIDLN  780
CDPDREDDSQ LGSTHVSMMN LLQVASLPLE TYLKENGLTS LISEQPANSA SHAPPQIIAE  840
GDAQDNSCFP SATEERESKD EENGETGSDR VENDP*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j9a_A2e-692994282131B3 domain-containing transcription repressor VAL1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1694705KRRFKTLMMRKK
2694707KRRFKTLMMRKKKR
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional repressor of gene expression involved in embryonic pathways, such as LEC1, ABI3, and FUS3. Repressor of the sugar-inducible genes involved in the seed maturation program in seedlings. Plays an essential role in regulating the transition from seed maturation to seedling growth. Functionally redundant with VAL1/HSI2. {ECO:0000269|PubMed:17158584, ECO:0000269|PubMed:17267611}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007033532.20.0PREDICTED: B3 domain-containing transcription repressor VAL2 isoform X2
SwissprotQ5CCK40.0VAL2_ARATH; B3 domain-containing transcription repressor VAL2
TrEMBLA0A061EIG60.0A0A061EIG6_THECC; Transcription factor, putative isoform 3
STRINGEOY044560.0(Theobroma cacao)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G32010.10.0HSI2-like 1
Publications ? help Back to Top
  1. Motamayor JC, et al.
    The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color.
    Genome Biol., 2013. 14(6): p. r53
    [PMID:23731509]
  2. Jia H,McCarty DR,Suzuki M
    Distinct roles of LAFL network genes in promoting the embryonic seedling fate in the absence of VAL repression.
    Plant Physiol., 2013. 163(3): p. 1293-305
    [PMID:24043445]
  3. Chhun T, et al.
    HSI2 Repressor Recruits MED13 and HDA6 to Down-Regulate Seed Maturation Gene Expression Directly During Arabidopsis Early Seedling Growth.
    Plant Cell Physiol., 2016. 57(8): p. 1689-706
    [PMID:27335347]
  4. Yuan W, et al.
    A cis cold memory element and a trans epigenome reader mediate Polycomb silencing of FLC by vernalization in Arabidopsis.
    Nat. Genet., 2016. 48(12): p. 1527-1534
    [PMID:27819666]
  5. Li C,Cui Y
    A DNA element that remembers winter.
    Nat. Genet., 2016. 48(12): p. 1451-1452
    [PMID:27898079]