PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thecc1EG019701t2
Common NameTCM_019701
Organism
Theobroma cacao
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
Family B3
Protein Properties Length: 912aa    MW: 100009 Da    PI: 6.9349
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thecc1EG019701t2genomeCGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B359.27.2e-19321420198
                       EEEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSE CS
                B3   1 ffkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltledesgrsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvFkldgrse 89 
                       f+kvl+ sd+++ grlvlpk +ae++   ++++e+  l+++d +g++W +++++  +++s++yvl+ G     ++ +L++gD+v+F++++  e
  Thecc1EG019701t2 321 FEKVLSASDAGRIGRLVLPKACAEAYfpPISQPEGLPLKIQDVKGKEWMFQFRFwpNNNSRMYVLE-GVTPCIQSMQLQAGDTVTFSRMD-PE 411
                       99**************************555566778***************9989999999***9.********************876.77 PP

                       E..EEEEE- CS
                B3  90 felvvkvfr 98 
                       ++lv+++++
  Thecc1EG019701t2 412 GKLVMGFRK 420
                       777877776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.108.5E-31313430IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019367.72E-20318420IPR015300DNA-binding pseudobarrel domain
CDDcd100173.63E-23319420No hitNo description
PROSITE profilePS5086311.18321422IPR003340B3 DNA binding domain
PfamPF023622.0E-16321420IPR003340B3 DNA binding domain
SMARTSM010199.5E-22321421IPR003340B3 DNA binding domain
PROSITE profilePS5105014.086586636IPR011124Zinc finger, CW-type
PfamPF074963.5E-12591633IPR011124Zinc finger, CW-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010030Biological Processpositive regulation of seed germination
GO:2000034Biological Processregulation of seed maturation
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 912 aa     Download sequence    Send to blast
MASKSCMNGL CGASTSIEWR KGWTLRSGDF ANLCDKCGSA YEQLIFCDVF HSKDSGWREC  60
TSCGKRLHCG CIASRCLLEL LDSGGVNCIS CTKKSGFNPM IEDVKPNGFS IVKGDAGQLH  120
STSADNQLSG VSIENLKLMQ LTSNAESIGL RQMLQLHNDD ASGSLGQMKQ EEVLPPAREI  180
GSTCMSNINQ VSNGSVQSVK PNICKANIYD SLPQTNLSIS LGGPLGNQNV FPGSVVDEKG  240
KMSSVLQQAS KSRHLLPKPP KSVLATGLEV NAGMVPPIRV ARPPAEGRGR NQLLPRYWPR  300
ITDQELQQIS GDSNSTIVPL FEKVLSASDA GRIGRLVLPK ACAEAYFPPI SQPEGLPLKI  360
QDVKGKEWMF QFRFWPNNNS RMYVLEGVTP CIQSMQLQAG DTVTFSRMDP EGKLVMGFRK  420
ATNTAAAQET LPSAIPNGSL SSESFFSGVF ENLPIISGYS GLLQSLKGST DPHLNALSKH  480
LSSASGDISW HKSDKHEDRT REGLLLPSML APERKRTRNI GSKSKRLLID SQDALELKLT  540
WEEAQDLLRP PPSIKPSVVT IENHDFEEYD EPPVFGKRSI FAVRSNGGQE QWAQCDSCSK  600
WRRLPVDALL PPKWTCADNN WDQSRSSCSA PDELTPREVE NLLRLNKDFK KRRIVAYHRP  660
TQEHESSGLD ALANAAILGD NVDNLGTTSV ATTTKHPRHR PGCSCIVCIQ PPSGKGKHKP  720
TCTCNVCMTV KRRFKTLMMR KKKRQSEREA EIAQRNQQAW GSREEAEVDS TSKHVSSHHD  780
PSENEARSVN ELESKSQGHN LPPKVVESNK GQIDLNCDPD REDDSQLGST HVSMMNLLQV  840
ASLPLETYLK ENGLTSLISE QPANSASHAP PQIIAEGDAQ DNSCFPSATE ERESKDEENG  900
ETGSDRVEND P*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j9a_A4e-692994282131B3 domain-containing transcription repressor VAL1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1730741KRRFKTLMMRKK
2730743KRRFKTLMMRKKKR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007033531.20.0PREDICTED: B3 domain-containing transcription repressor VAL2 isoform X1
SwissprotQ6Z3U30.0Y7797_ORYSJ; B3 domain-containing protein Os07g0679700
TrEMBLA0A061EJ570.0A0A061EJ57_THECC; High-level expression of sugar-inducible gene 2, putative isoform 2
STRINGEOY044560.0(Theobroma cacao)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G32010.10.0HSI2-like 1
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Motamayor JC, et al.
    The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color.
    Genome Biol., 2013. 14(6): p. r53
    [PMID:23731509]