PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thecc1EG019459t1
Common NameTCM_019459
Organism
Theobroma cacao
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
Family LBD
Protein Properties Length: 368aa    MW: 40173.9 Da    PI: 8.541
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thecc1EG019459t1genomeCGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260100.51.6e-314107199
            DUF260   1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqle 88 
                       +C++C+vlr++C+++C ++p++     p++q++++ +++k++G++ +++l++a pe+ r+++++sl+yeA+ r+ +P+yG+vg+++++++ql+
  Thecc1EG019459t1   4 SCNGCRVLRKGCSENCSIRPCLqwiksPESQANATVFLAKFYGRAGLMNLINAGPEHLRPAIFRSLLYEACGRIVNPIYGSVGLLWSGSWQLC 96 
                       6******************************************************************************************** PP

            DUF260  89 qlkaelallke 99 
                       q+++e++l ++
  Thecc1EG019459t1  97 QAAVEAVLKGA 107
                       *****998766 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089117.1443109IPR004883Lateral organ boundaries, LOB
PfamPF031955.0E-254103IPR004883Lateral organ boundaries, LOB
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
Sequence ? help Back to Top
Protein Sequence    Length: 368 aa     Download sequence    Send to blast
MRMSCNGCRV LRKGCSENCS IRPCLQWIKS PESQANATVF LAKFYGRAGL MNLINAGPEH  60
LRPAIFRSLL YEACGRIVNP IYGSVGLLWS GSWQLCQAAV EAVLKGAPIT PIASEAAANG  120
QGPPLKAYDI RHVSKDENSA ASNDLHRVKT RCRVKRTVKP KVSKPVVEEE NRNPEAEAQC  180
YADEGNRSTS HESSLSHQSE LAVMDGDSKE TESMISVETA VASRLFPAEP EFRCKVSEER  240
TPEGSGDVGL ELTLGFVPVM KRCTNGVYMN RSAGVLYSWI CALSSPYFVL PSIEVNLAPL  300
RVEMFVWQLM HDKFAVKNEL AKRVHVTRHG KSGQDGAKHR AVTTLGSGKA FFEAWNGVTT  360
VGTDGKL*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017975845.10.0PREDICTED: LOB domain-containing protein 41
SwissprotQ9M8861e-101LBD41_ARATH; LOB domain-containing protein 41
TrEMBLA0A061EH820.0A0A061EH82_THECC; LOB domain-containing protein 41
STRINGEOY042010.0(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM77212741
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G02550.13e-92LOB domain-containing protein 41
Publications ? help Back to Top
  1. Motamayor JC, et al.
    The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color.
    Genome Biol., 2013. 14(6): p. r53
    [PMID:23731509]