PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Thecc1EG019445t1 | ||||||||
Common Name | TCM_019445 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
|
||||||||
Family | bHLH | ||||||||
Protein Properties | Length: 257aa MW: 28649.3 Da PI: 6.7164 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 26.5 | 1.1e-08 | 149 | 196 | 4 | 55 |
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +h+ +Er RR++iN+++ L++l+P + +k + a +L + ++Y++sLq Thecc1EG019445t1 149 SHSLAERVRREKINEKMRCLQDLVPGC----HKTMGMAVMLDEIINYVHSLQ 196 8*************************9....788999************998 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00083 | 1.59E-9 | 143 | 200 | No hit | No description |
SuperFamily | SSF47459 | 2.88E-17 | 143 | 212 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 15.339 | 145 | 195 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 3.6E-17 | 145 | 208 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 8.6E-6 | 149 | 196 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 2.3E-9 | 151 | 201 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:2000488 | Biological Process | positive regulation of brassinosteroid biosynthetic process | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 257 aa Download sequence Send to blast |
MSEMDISMEM TKQSSELNST LLENFSIADF SLETLLAHQL PEYSASCTHD NLSTTVLAGS 60 LTAIPTARTV TVDEDVFIES KKRKAMEQST SNYQSISPAV STTEIGGNTS TRKRNRLGKG 120 KKGKSNEKQP EKAEEVIHVR ARRGQATDSH SLAERVRREK INEKMRCLQD LVPGCHKTMG 180 MAVMLDEIIN YVHSLQNQVE FLSMELAAAS SAYDLNLETE CIKKAQGTNS HAAQQMEKWA 240 RDRYGEQNCF HSTWPL* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_017974397.1 | 0.0 | PREDICTED: transcription factor bHLH75 | ||||
Swissprot | A4D998 | 2e-52 | BH075_ARATH; Transcription factor bHLH75 | ||||
TrEMBL | A0A061EIH6 | 0.0 | A0A061EIH6_THECC; Basic helix-loop-helix DNA-binding superfamily protein, putative | ||||
STRING | EOY04182 | 0.0 | (Theobroma cacao) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM17213 | 8 | 10 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G25330.1 | 6e-55 | bHLH family protein |
Link Out ? help Back to Top | |
---|---|
Phytozome | Thecc1EG019445t1 |
Entrez Gene | 18602048 |
Publications ? help Back to Top | |||
---|---|---|---|
|