PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thecc1EG019445t1
Common NameTCM_019445
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
Family bHLH
Protein Properties Length: 257aa    MW: 28649.3 Da    PI: 6.7164
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thecc1EG019445t1genomeCGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH26.51.1e-08149196455
                       HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
               HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                       +h+ +Er RR++iN+++  L++l+P +    +k +  a +L + ++Y++sLq
  Thecc1EG019445t1 149 SHSLAERVRREKINEKMRCLQDLVPGC----HKTMGMAVMLDEIINYVHSLQ 196
                       8*************************9....788999************998 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000831.59E-9143200No hitNo description
SuperFamilySSF474592.88E-17143212IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.339145195IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.6E-17145208IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000108.6E-6149196IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.3E-9151201IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:2000488Biological Processpositive regulation of brassinosteroid biosynthetic process
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 257 aa     Download sequence    Send to blast
MSEMDISMEM TKQSSELNST LLENFSIADF SLETLLAHQL PEYSASCTHD NLSTTVLAGS  60
LTAIPTARTV TVDEDVFIES KKRKAMEQST SNYQSISPAV STTEIGGNTS TRKRNRLGKG  120
KKGKSNEKQP EKAEEVIHVR ARRGQATDSH SLAERVRREK INEKMRCLQD LVPGCHKTMG  180
MAVMLDEIIN YVHSLQNQVE FLSMELAAAS SAYDLNLETE CIKKAQGTNS HAAQQMEKWA  240
RDRYGEQNCF HSTWPL*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017974397.10.0PREDICTED: transcription factor bHLH75
SwissprotA4D9982e-52BH075_ARATH; Transcription factor bHLH75
TrEMBLA0A061EIH60.0A0A061EIH6_THECC; Basic helix-loop-helix DNA-binding superfamily protein, putative
STRINGEOY041820.0(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM17213810
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G25330.16e-55bHLH family protein
Publications ? help Back to Top
  1. Motamayor JC, et al.
    The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color.
    Genome Biol., 2013. 14(6): p. r53
    [PMID:23731509]
  2. Khan M, et al.
    Interplay between phosphorylation and SUMOylation events determines CESTA protein fate in brassinosteroid signalling.
    Nat Commun, 2014. 5: p. 4687
    [PMID:25134617]
  3. Eremina M, et al.
    Brassinosteroids participate in the control of basal and acquired freezing tolerance of plants.
    Proc. Natl. Acad. Sci. U.S.A., 2016. 113(40): p. E5982-E5991
    [PMID:27655893]
  4. Pfannebecker KC,Lange M,Rupp O,Becker A
    Seed Plant-Specific Gene Lineages Involved in Carpel Development.
    Mol. Biol. Evol., 2017. 34(4): p. 925-942
    [PMID:28087776]