PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thecc1EG019357t1
Common NameTCM_019357
Organism
Theobroma cacao
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
Family C3H
Protein Properties Length: 313aa    MW: 36056.6 Da    PI: 9.2109
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thecc1EG019357t1genomeCGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH504.8e-16239263226
                       -S---SGGGGTS--TTTTT-SS-SS CS
           zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHg 26 
                       ktelC+ +++tGtC+yGd+C+FaHg
  Thecc1EG019357t1 239 KTELCNKWQETGTCPYGDQCQFAHG 263
                       8***********************8 PP
2zf-CCCH23.69e-08276301126
                       --S---SGGGGTS--TTTTT-SS-SS CS
           zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                       ykte Cr  +++ tC+yG rC+F H+
  Thecc1EG019357t1 276 YKTEVCRMVLAGQTCPYGHRCHFRHS 301
                       9**********99**********998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1000.102.6E-18233270IPR000571Zinc finger, CCCH-type
SuperFamilySSF902295.89E-11235269IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010316.155237265IPR000571Zinc finger, CCCH-type
SMARTSM003569.1E-9237264IPR000571Zinc finger, CCCH-type
PfamPF006426.6E-13239263IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.104.5E-13271304IPR000571Zinc finger, CCCH-type
SuperFamilySSF902295.63E-9271306IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.788275303IPR000571Zinc finger, CCCH-type
SMARTSM003562.6E-6275302IPR000571Zinc finger, CCCH-type
PfamPF006425.7E-5276301IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0051511Biological Processnegative regulation of unidimensional cell growth
GO:1901347Biological Processnegative regulation of secondary cell wall biogenesis
GO:0003729Molecular FunctionmRNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 313 aa     Download sequence    Send to blast
MEKPRSPSSN QNTTVYNQNY VSVSPPSSPL QNHHRYRQDI ATDFSSMYNS IFPPNSPLPH  60
SLSLTPSSCS SSDDLHLNLK LTSDAIATEH RLNQARLILE YRRLCDHYDL CFTRLQALIR  120
ELESLRRENT DLRTANTELI KLLSLHSSQA AMNRNLQHEE VSDLNVKRWE RRSSNGQRNS  180
LPKSVSVRSS SYFKVNQQQG SSNQQRVVNP SRRMYVPSEA KRELEKAMEL EVYNQGTVKT  240
ELCNKWQETG TCPYGDQCQF AHGITELRPV IRHPKYKTEV CRMVLAGQTC PYGHRCHFRH  300
SLTEQERLLI PR*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1rgo_A9e-22239304570Butyrate response factor 2
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007033165.20.0PREDICTED: zinc finger CCCH domain-containing protein 14
RefseqXP_017974749.10.0PREDICTED: zinc finger CCCH domain-containing protein 14
SwissprotQ9C9N33e-80C3H14_ARATH; Zinc finger CCCH domain-containing protein 14
TrEMBLA0A061EGU10.0A0A061EGU1_THECC; Zinc finger protein, putative
STRINGEOY040910.0(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM106232533
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66810.13e-77C3H family protein
Publications ? help Back to Top
  1. Motamayor JC, et al.
    The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color.
    Genome Biol., 2013. 14(6): p. r53
    [PMID:23731509]