PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Thecc1EG019356t5 | ||||||||
Common Name | TCM_019356 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
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Family | NF-YC | ||||||||
Protein Properties | Length: 173aa MW: 20111.4 Da PI: 8.5279 | ||||||||
Description | NF-YC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NF-YC | 143.2 | 6e-45 | 61 | 161 | 2 | 98 |
NF-YC 2 lksfwekq...iekatdfk.nhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifd 90 l+ fw +q i + t fk +h+lPlarik+i+k+d+dvkmisa+aPvl+skacelfileltlr+wl++ee krrtl++sdia a+ + + d Thecc1EG019356t5 61 LELFWYQQmmeIHNITAFKsHHQLPLARIKRIMKSDKDVKMISADAPVLFSKACELFILELTLRAWLETEEGKRRTLQRSDIARAIRQEEALD 153 789****965556778899889*********************************************************************** PP NF-YC 91 flvdivpr 98 flvd+vp Thecc1EG019356t5 154 FLVDVVPL 161 ******96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47113 | 1.43E-28 | 61 | 155 | IPR009072 | Histone-fold |
Gene3D | G3DSA:1.10.20.10 | 1.0E-34 | 79 | 147 | IPR009072 | Histone-fold |
Pfam | PF00808 | 2.3E-21 | 83 | 146 | IPR003958 | Transcription factor CBF/NF-Y/archaeal histone domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0046982 | Molecular Function | protein heterodimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 173 aa Download sequence Send to blast |
MAERLTMDLN QSMEFTPSST SSPQIHNFLP MTSFMLSFHQ ASKEDGEEVK HSHLLIQKRN 60 LELFWYQQMM EIHNITAFKS HHQLPLARIK RIMKSDKDVK MISADAPVLF SKACELFILE 120 LTLRAWLETE EGKRRTLQRS DIARAIRQEE ALDFLVDVVP LINQKRKMSV IL* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5g49_B | 1e-37 | 68 | 160 | 3 | 94 | NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT C-3 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 133 | 139 | RRTLQRS |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters. {ECO:0000250}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_007033162.1 | 1e-119 | PREDICTED: nuclear transcription factor Y subunit C-2 | ||||
Swissprot | Q8LCG7 | 8e-43 | NFYC2_ARATH; Nuclear transcription factor Y subunit C-2 | ||||
TrEMBL | A0A061EI48 | 1e-123 | A0A061EI48_THECC; Nuclear factor Y, putative isoform 3 | ||||
TrEMBL | A0A061EP25 | 1e-123 | A0A061EP25_THECC; Nuclear factor Y, putative isoform 5 | ||||
STRING | EOY04085 | 1e-118 | (Theobroma cacao) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G56170.2 | 3e-45 | nuclear factor Y, subunit C2 |
Link Out ? help Back to Top | |
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Phytozome | Thecc1EG019356t5 |
Entrez Gene | 18601985 |