PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Thecc1EG019356t4 | ||||||||
Common Name | TCM_019356 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
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Family | NF-YC | ||||||||
Protein Properties | Length: 227aa MW: 26353.2 Da PI: 5.6046 | ||||||||
Description | NF-YC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NF-YC | 142.2 | 1.2e-44 | 65 | 165 | 2 | 98 |
NF-YC 2 lksfwekq...iekatdfk.nhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifd 90 l+ fw +q i + t fk +h+lPlarik+i+k+d+dvkmisa+aPvl+skacelfileltlr+wl++ee krrtl++sdia a+ + + d Thecc1EG019356t4 65 LELFWYQQmmeIHNITAFKsHHQLPLARIKRIMKSDKDVKMISADAPVLFSKACELFILELTLRAWLETEEGKRRTLQRSDIARAIRQEEALD 157 789****965556778899889*********************************************************************** PP NF-YC 91 flvdivpr 98 flvd+vp Thecc1EG019356t4 158 FLVDVVPL 165 ******96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47113 | 3.02E-28 | 66 | 159 | IPR009072 | Histone-fold |
Gene3D | G3DSA:1.10.20.10 | 1.9E-34 | 83 | 151 | IPR009072 | Histone-fold |
Pfam | PF00808 | 4.0E-21 | 87 | 150 | IPR003958 | Transcription factor CBF/NF-Y/archaeal histone domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0046982 | Molecular Function | protein heterodimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 227 aa Download sequence Send to blast |
MKRPMAERLT MDLNQSMEFT PSSTSSPQIH NFLPMTSFML SFHQASKEDG EEVKHSHLLI 60 QKRNLELFWY QQMMEIHNIT AFKSHHQLPL ARIKRIMKSD KDVKMISADA PVLFSKACEL 120 FILELTLRAW LETEEGKRRT LQRSDIARAI RQEEALDFLV DVVPLINQKD DDVKFAEENE 180 CDPINQLQFP VLDTNADLVM RSPEVQHLMI KTPMSSDEFN YESATR* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5g49_B | 2e-36 | 72 | 164 | 3 | 94 | NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT C-3 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 137 | 143 | RRTLQRS |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_007033162.1 | 1e-168 | PREDICTED: nuclear transcription factor Y subunit C-2 | ||||
TrEMBL | A0A061EHG5 | 1e-166 | A0A061EHG5_THECC; Nuclear factor Y, putative isoform 4 | ||||
STRING | EOY04085 | 1e-166 | (Theobroma cacao) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G56170.2 | 4e-44 | nuclear factor Y, subunit C2 |
Link Out ? help Back to Top | |
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Phytozome | Thecc1EG019356t4 |
Entrez Gene | 18601985 |
Publications ? help Back to Top | |||
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