PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thecc1EG019356t3
Common NameTCM_019356
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
Family NF-YC
Protein Properties Length: 193aa    MW: 22250 Da    PI: 9.6549
Description NF-YC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thecc1EG019356t3genomeCGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YC142.88.1e-4581181298
             NF-YC   2 lksfwekq...iekatdfk.nhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifd 90 
                       l+ fw +q   i + t fk +h+lPlarik+i+k+d+dvkmisa+aPvl+skacelfileltlr+wl++ee krrtl++sdia a+ + +  d
  Thecc1EG019356t3  81 LELFWYQQmmeIHNITAFKsHHQLPLARIKRIMKSDKDVKMISADAPVLFSKACELFILELTLRAWLETEEGKRRTLQRSDIARAIRQEEALD 173
                       789****965556778899889*********************************************************************** PP

             NF-YC  91 flvdivpr 98 
                       flvd+vp 
  Thecc1EG019356t3 174 FLVDVVPL 181
                       ******96 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF471131.77E-2879175IPR009072Histone-fold
Gene3DG3DSA:1.10.20.101.2E-3499167IPR009072Histone-fold
PfamPF008082.9E-21103166IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 193 aa     Download sequence    Send to blast
MAAVVGARST IPWGLDMKRP MAERLTMDLN QSMEFTPSST SSPQIHNFLP MTSFMLSFHQ  60
ASKEDGEEVK HSHLLIQKRN LELFWYQQMM EIHNITAFKS HHQLPLARIK RIMKSDKDVK  120
MISADAPVLF SKACELFILE LTLRAWLETE EGKRRTLQRS DIARAIRQEE ALDFLVDVVP  180
LINQKRKMSV IL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5g49_B2e-3788180394NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT C-3
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1153159RRTLQRS
Functional Description ? help Back to Top
Source Description
UniProtStimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters. {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007033162.11e-122PREDICTED: nuclear transcription factor Y subunit C-2
SwissprotQ8LCG72e-42NFYC2_ARATH; Nuclear transcription factor Y subunit C-2
TrEMBLA0A061EI481e-139A0A061EI48_THECC; Nuclear factor Y, putative isoform 3
STRINGEOY040851e-134(Theobroma cacao)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G56170.29e-45nuclear factor Y, subunit C2
Publications ? help Back to Top
  1. Motamayor JC, et al.
    The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color.
    Genome Biol., 2013. 14(6): p. r53
    [PMID:23731509]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Li S, et al.
    HEAT-INDUCED TAS1 TARGET1 Mediates Thermotolerance via HEAT STRESS TRANSCRIPTION FACTOR A1a-Directed Pathways in Arabidopsis.
    Plant Cell, 2014. 26(4): p. 1764-1780
    [PMID:24728648]
  4. Mei X, et al.
    Identification and characterization of paternal-preferentially expressed gene NF-YC8 in maize endosperm.
    Mol. Genet. Genomics, 2015. 290(5): p. 1819-31
    [PMID:25851237]
  5. Baud S, et al.
    Deciphering the Molecular Mechanisms Underpinning the Transcriptional Control of Gene Expression by Master Transcriptional Regulators in Arabidopsis Seed.
    Plant Physiol., 2016. 171(2): p. 1099-112
    [PMID:27208266]
  6. Zhao H, et al.
    The Arabidopsis thaliana Nuclear Factor Y Transcription Factors.
    Front Plant Sci, 2016. 7: p. 2045
    [PMID:28119722]