PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Thecc1EG019261t1 | ||||||||
Common Name | TCM_019261 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
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Family | MYB | ||||||||
Protein Properties | Length: 225aa MW: 25567.1 Da PI: 10.1639 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 53.1 | 7.1e-17 | 13 | 60 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+W+++Ed++l+d+++ +G g+W++ ++ g++R++k+c++rw +yl Thecc1EG019261t1 13 KGAWSKQEDQKLIDYIRTHGEGCWRSLPKAAGLHRCGKSCRLRWINYL 60 79********************************************97 PP | |||||||
2 | Myb_DNA-binding | 51.4 | 2.6e-16 | 66 | 110 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rg++ ++E++l+++++++lG++ W++Ia +++ gRt++++k++w+++ Thecc1EG019261t1 66 RGNFAQDEEDLIIKLHALLGNR-WSLIAGRLP-GRTDNEVKNYWNSH 110 8999******************.*********.***********987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 3.7E-24 | 4 | 63 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 17.395 | 8 | 60 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 1.02E-28 | 10 | 107 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 3.0E-14 | 12 | 62 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 2.5E-15 | 13 | 60 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 8.35E-11 | 15 | 60 | No hit | No description |
PROSITE profile | PS51294 | 26.331 | 61 | 115 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 6.1E-26 | 64 | 116 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 3.7E-15 | 65 | 113 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.2E-14 | 66 | 110 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 2.14E-10 | 68 | 111 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 225 aa Download sequence Send to blast |
MRKPCCDKQG TNKGAWSKQE DQKLIDYIRT HGEGCWRSLP KAAGLHRCGK SCRLRWINYL 60 RPDIKRGNFA QDEEDLIIKL HALLGNRWSL IAGRLPGRTD NEVKNYWNSH IKRKLIKLGI 120 DPNNHKLNQY PLRPQPQHVS PSSPASLNVA RKPRRSSAAK DRVSDAASCL EDERSGRVSK 180 LDLDLTIAFP PTPTNHHEEK QQNTASIMTS EEENYTAPTL LLFR* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 6e-29 | 13 | 115 | 7 | 108 | B-MYB |
Search in ModeBase |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By ethylene, asbscisic acid (ABA), auxin (IAA), and Pseudomonas syringae pv. phaseolica. {ECO:0000269|PubMed:9839469}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AF034134 | 1e-149 | AF034134.1 Gossypium hirsutum MYB-like DNA-binding domain protein (MYB6) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_007033078.2 | 1e-166 | PREDICTED: transcription repressor MYB6 | ||||
Swissprot | Q38851 | 2e-78 | MYB6_ARATH; Transcription repressor MYB6 | ||||
TrEMBL | A0A061ENU4 | 1e-166 | A0A061ENU4_THECC; Myb domain protein 6 | ||||
STRING | EOY04004 | 1e-167 | (Theobroma cacao) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM4 | 28 | 2646 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G09460.1 | 7e-81 | myb domain protein 6 |
Link Out ? help Back to Top | |
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Phytozome | Thecc1EG019261t1 |
Entrez Gene | 18601922 |
Publications ? help Back to Top | |||
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