PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thecc1EG019150t1
Common NameTCM_019150
Organism
Theobroma cacao
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
Family GeBP
Protein Properties Length: 291aa    MW: 33013.6 Da    PI: 8.6966
Description GeBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thecc1EG019150t1genomeCGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF57380.13.3e-2564156297
            DUF573   2 lfqrlwseeDeivlLqGlidfkaktgkspsddidafyefvkksisfkvsksqlveKirrLKkKfkkkvkkaksgkepsfskehdqkifelskk 94 
                       +f+r+w+e Dei++LqGl++    +g s  +d+  fy  +++sis  +sksql+eK+rrL+kKf+  ++k ++g +ps  ++hdq  f+lsk+
  Thecc1EG019150t1  64 KFHRIWTELDEISFLQGLLQS---HGLSFPKDLPIFYFNFSNSISQPYSKSQLFEKLRRLRKKFRVISSKLARGLNPSALSPHDQALFDLSKR 153
                       699****************87...8*9999*************************************************************** PP

            DUF573  95 iWg 97 
                       +W 
  Thecc1EG019150t1 154 LWS 156
                       **7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF045045.4E-2665156IPR007592Protein of unknown function DUF573
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 291 aa     Download sequence    Send to blast
MDSTPLQPQP LKPSASKLPI KRKTPFPQHH HQFLTPIPQP LAFSPLDHSP PSSSTPKPRP  60
PPFKFHRIWT ELDEISFLQG LLQSHGLSFP KDLPIFYFNF SNSISQPYSK SQLFEKLRRL  120
RKKFRVISSK LARGLNPSAL SPHDQALFDL SKRLWSPEFS STSPFGKSSS GFNLGFSLDH  180
ENSGIVDGND FEDCDLIEND GELKMNEVNV NYDFGGGRDE VVNDGQIDGV VAKSVLDVFD  240
ECFKEVGMIF AKQGLVWLDT MKRRWKEQRI SELDMLGRRL RLVIENSLTR *
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021296628.10.0probable transcription factor At5g28040
TrEMBLA0A061EFY60.0A0A061EFY6_THECC; DNA-binding storekeeper protein-related transcriptional regulator, putative
STRINGEOY039350.0(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM1804289
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G28040.12e-09DNA-binding storekeeper protein-related transcriptional regulator
Publications ? help Back to Top
  1. Motamayor JC, et al.
    The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color.
    Genome Biol., 2013. 14(6): p. r53
    [PMID:23731509]