PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Thecc1EG019107t1 | ||||||||
Common Name | TCM_019107 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
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Family | CO-like | ||||||||
Protein Properties | Length: 383aa MW: 42110.8 Da PI: 5.8273 | ||||||||
Description | CO-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-B_box | 18.7 | 3.7e-06 | 21 | 61 | 4 | 38 |
zf-B_box 4 rkCpeHeekelqlfCedCqqllCedClleeHkg......Ht 38 r+C+++ + + +C+ ++ +lC+ C H H+ Thecc1EG019107t1 21 RVCDTCRSAACTVYCQADSAYLCAGCDARVHAAnrvasrHE 61 79******99*****************99995555666665 PP | |||||||
2 | zf-B_box | 32 | 2.5e-10 | 63 | 108 | 3 | 42 |
zf-B_box 3 erkCpeHeekelqlfCedCqqllCedClleeHkg......Htvvpl 42 ++C+ +e+ ++ + C+ + lC +C e+H+ H++vp+ Thecc1EG019107t1 63 VWVCEACERAPAAFLCKADAASLCTTCDAEIHSAnplarrHQRVPI 108 689*****************************66899999**9997 PP | |||||||
3 | CCT | 70.3 | 4.7e-24 | 313 | 356 | 1 | 44 |
CCT 1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 Rea++lRY+eK+ktRkFeK+irY+sRKa+Ae+RpR+KGrF+k++ Thecc1EG019107t1 313 REARVLRYREKKKTRKFEKTIRYASRKAYAETRPRIKGRFAKRT 356 9*****************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00336 | 8.5E-9 | 18 | 65 | IPR000315 | B-box-type zinc finger |
PROSITE profile | PS50119 | 10.324 | 18 | 65 | IPR000315 | B-box-type zinc finger |
CDD | cd00021 | 3.48E-8 | 21 | 65 | No hit | No description |
PROSITE profile | PS50119 | 11.476 | 61 | 108 | IPR000315 | B-box-type zinc finger |
Pfam | PF00643 | 3.6E-8 | 62 | 108 | IPR000315 | B-box-type zinc finger |
CDD | cd00021 | 1.12E-8 | 64 | 108 | No hit | No description |
SMART | SM00336 | 3.2E-11 | 66 | 108 | IPR000315 | B-box-type zinc finger |
Pfam | PF06203 | 7.5E-18 | 313 | 355 | IPR010402 | CCT domain |
PROSITE profile | PS51017 | 16.648 | 313 | 355 | IPR010402 | CCT domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009658 | Biological Process | chloroplast organization | ||||
GO:0009909 | Biological Process | regulation of flower development | ||||
GO:0045892 | Biological Process | negative regulation of transcription, DNA-templated | ||||
GO:0048576 | Biological Process | positive regulation of short-day photoperiodism, flowering | ||||
GO:0048579 | Biological Process | negative regulation of long-day photoperiodism, flowering | ||||
GO:0005622 | Cellular Component | intracellular | ||||
GO:0005515 | Molecular Function | protein binding | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 383 aa Download sequence Send to blast |
MLKEETSDAS GGGGSGNNWA RVCDTCRSAA CTVYCQADSA YLCAGCDARV HAANRVASRH 60 ERVWVCEACE RAPAAFLCKA DAASLCTTCD AEIHSANPLA RRHQRVPILP ISGCLYGPSA 120 TELRGRKMAS AAETEDGFMD PEGDETIAED EDEAASWLLL NPGKNSTNQR NGCLFGGEVD 180 DYLDIVEYNS SVENHITDQY NQQQQHYSVP NKSYGGDSVV PIQSGEAKDH LQQQQHQQQT 240 LQFGLDYESS KAAYSYNGSV SHSVSLSSVD VGIVPESTMS DISISHRRPP KGTIDLFSGP 300 SIQMPTQLTP MDREARVLRY REKKKTRKFE KTIRYASRKA YAETRPRIKG RFAKRTDVEV 360 EVDQMFSTTL MTETGYGIVP SF* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Putative transcription factor. Does not affect flowering time. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Expressed with a circadian rhythm showing a peak at dawn. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_007032965.2 | 0.0 | PREDICTED: zinc finger protein CONSTANS-LIKE 2 | ||||
Swissprot | Q96502 | 1e-154 | COL2_ARATH; Zinc finger protein CONSTANS-LIKE 2 | ||||
TrEMBL | A0A061EG80 | 0.0 | A0A061EG80_THECC; Zinc finger protein CONSTANS-LIKE 2 | ||||
STRING | EOY03891 | 0.0 | (Theobroma cacao) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM2128 | 26 | 70 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G02380.1 | 1e-126 | CONSTANS-like 2 |
Link Out ? help Back to Top | |
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Phytozome | Thecc1EG019107t1 |
Entrez Gene | 18601831 |
Publications ? help Back to Top | |||
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