PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thecc1EG019015t3
Common NameTCM_019015
Organism
Theobroma cacao
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
Family bHLH
Protein Properties Length: 342aa    MW: 38782.3 Da    PI: 5.6945
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thecc1EG019015t3genomeCGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH57.42.7e-18107156255
                       HHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
               HLH   2 rrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                       r +h+e E+rRR++iN++f++Lr+l+P++    ++K +Ka+ L +++eYI+ Lq
  Thecc1EG019015t3 107 RSKHSETEQRRRSKINERFQTLRDLIPQN----DQKRDKASFLLEVIEYIQFLQ 156
                       899*************************9....9*******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.280.102.8E-24102176IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474594.71E-20104176IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088817.625105155IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000108.1E-16107156IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000838.57E-18107160No hitNo description
SMARTSM003534.2E-14111161IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006351Biological Processtranscription, DNA-templated
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 342 aa     Download sequence    Send to blast
FLRAKKEKNI YIYIYPTISP FLLSAKPDPP DSFEPLSWSS ISRPAAPSLF FLAENFYRYF  60
FKKILKMVKP VATAQLHQEE EDEDDYEDKG ETVKEGKGSE PKANTNRSKH SETEQRRRSK  120
INERFQTLRD LIPQNDQKRD KASFLLEVIE YIQFLQEKLQ MYEGSYQGWS QEPTKLIPWR  180
NHGLPESFID NSQVMKNGSS CENNVIIPSI LANTQNSIES DLGNAAVFKA LDHPPGSATS  240
VVNMQTQPNT FATHGRGSIP TQSFHESASD SENVVYRPQF QSWQSRECLT ESAVPNNSAN  300
GQEDLTIRDD SVGLSSAYSQ GLQVWICHRQ ASLCKLMLVN E*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021296319.10.0transcription factor BIM2-like isoform X3
TrEMBLA0A061ENC90.0A0A061ENC9_THECC; BES1-interacting Myc-like protein 2, putative isoform 3 (Fragment)
STRINGEOY038240.0(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM1716778
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G38860.11e-46BES1-interacting Myc-like protein 3
Publications ? help Back to Top
  1. Motamayor JC, et al.
    The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color.
    Genome Biol., 2013. 14(6): p. r53
    [PMID:23731509]