PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Thecc1EG019015t2 | ||||||||
Common Name | TCM_019015 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
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Family | bHLH | ||||||||
Protein Properties | Length: 309aa MW: 34558.9 Da PI: 5.6831 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 57.6 | 2.3e-18 | 41 | 90 | 2 | 55 |
HHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 2 rrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 r +h+e E+rRR++iN++f++Lr+l+P++ ++K +Ka+ L +++eYI+ Lq Thecc1EG019015t2 41 RSKHSETEQRRRSKINERFQTLRDLIPQN----DQKRDKASFLLEVIEYIQFLQ 90 899*************************9....9*******************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:4.10.280.10 | 2.3E-24 | 36 | 110 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 3.93E-20 | 38 | 110 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 17.625 | 39 | 89 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 1.71E-17 | 41 | 94 | No hit | No description |
Pfam | PF00010 | 6.9E-16 | 41 | 90 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 4.2E-14 | 45 | 95 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006351 | Biological Process | transcription, DNA-templated | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 309 aa Download sequence Send to blast |
MVKPVATAQL HQEEEDEDDY EDKGETVKEG KGSEPKANTN RSKHSETEQR RRSKINERFQ 60 TLRDLIPQND QKRDKASFLL EVIEYIQFLQ EKLQMYEGSY QGWSQEPTKL IPWRNHGLPE 120 SFIDNSQVMK NGSSFFKALD HPPGSATSVV NMQTQPNTFA THGRGSIPTQ SFHESASDSE 180 NVVYRPQFQS WQSRECLTES AVPNNSANGQ EDLTIRDDSV GLSSAYSQGI LNSLTQALQS 240 SGVDMSQASI SVQIDVGKRV ASGVTSMASS SKEKEIQYRS NQMMAQTGAH SYTEESDQAY 300 KRRRTGKS* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_007032897.1 | 0.0 | PREDICTED: transcription factor BIM2 isoform X2 | ||||
TrEMBL | A0A061EGP6 | 0.0 | A0A061EGP6_THECC; BES1-interacting Myc-like protein 2, putative isoform 2 | ||||
STRING | Gorai.001G197500.1 | 1e-172 | (Gossypium raimondii) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G69010.1 | 8e-61 | BES1-interacting Myc-like protein 2 |
Link Out ? help Back to Top | |
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Phytozome | Thecc1EG019015t2 |
Entrez Gene | 18601778 |
Publications ? help Back to Top | |||
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