PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Thecc1EG019009t1 | ||||||||
Common Name | TCM_019009 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
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Family | G2-like | ||||||||
Protein Properties | Length: 328aa MW: 37417.4 Da PI: 8.3526 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 97.3 | 1.1e-30 | 224 | 278 | 2 | 56 |
G2-like 2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRla 56 +r+ W+peLH+rFvea++ LGG+e+AtPk+i+e+m+v+gLt+++vkSHLQkYRl+ Thecc1EG019009t1 224 NRRSWSPELHARFVEALNLLGGIEVATPKQIREVMQVEGLTNDQVKSHLQKYRLH 278 799**************************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 10.601 | 220 | 280 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 5.55E-17 | 221 | 281 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 8.9E-27 | 222 | 281 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 3.6E-25 | 223 | 278 | IPR006447 | Myb domain, plants |
Pfam | PF00249 | 7.5E-8 | 225 | 276 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 328 aa Download sequence Send to blast |
MASSSSLELN LSLKPSYVPK TIANLLKDLS HVDTASDKLA VLNDYINQHE EELNNIVAFK 60 HQLPQCMLLL MEALGTLKDE FMSIKNGMES ETGRPLMEFL AIKRKHYEEE QTDVSAAEKY 120 DCKGKSLMRS SPQFWNSNCN NKKQKTFIEF IQAPNQNPIP FKESTFSSSL AEKGCISKEI 180 IRKSYSRFAS VGTNNGDSRL NLRADNRTLN YHPRPLTQPI WKNNRRSWSP ELHARFVEAL 240 NLLGGIEVAT PKQIREVMQV EGLTNDQVKS HLQKYRLHCR RLPENYAKCL VKLQDPWHPQ 300 MYYGDPLSPE DSDENNSNPE GSLSRKS* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6j4k_A | 2e-15 | 225 | 276 | 4 | 55 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4k_B | 2e-15 | 225 | 276 | 4 | 55 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_A | 2e-15 | 225 | 276 | 4 | 55 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_C | 2e-15 | 225 | 276 | 4 | 55 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_D | 2e-15 | 225 | 276 | 4 | 55 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_F | 2e-15 | 225 | 276 | 4 | 55 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_H | 2e-15 | 225 | 276 | 4 | 55 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_J | 2e-15 | 225 | 276 | 4 | 55 | Protein PHOSPHATE STARVATION RESPONSE 1 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017974521.1 | 0.0 | PREDICTED: myb family transcription factor EFM | ||||
TrEMBL | A0A061EHD1 | 0.0 | A0A061EHD1_THECC; DNA binding protein, putative | ||||
STRING | EOY03817 | 0.0 | (Theobroma cacao) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM15410 | 7 | 16 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G37180.1 | 2e-37 | G2-like family protein |
Link Out ? help Back to Top | |
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Phytozome | Thecc1EG019009t1 |
Entrez Gene | 18601775 |
Publications ? help Back to Top | |||
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