PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thecc1EG019009t1
Common NameTCM_019009
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
Family G2-like
Protein Properties Length: 328aa    MW: 37417.4 Da    PI: 8.3526
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thecc1EG019009t1genomeCGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like97.31.1e-30224278256
           G2-like   2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRla 56 
                       +r+ W+peLH+rFvea++ LGG+e+AtPk+i+e+m+v+gLt+++vkSHLQkYRl+
  Thecc1EG019009t1 224 NRRSWSPELHARFVEALNLLGGIEVATPKQIREVMQVEGLTNDQVKSHLQKYRLH 278
                       799**************************************************97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129410.601220280IPR017930Myb domain
SuperFamilySSF466895.55E-17221281IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.608.9E-27222281IPR009057Homeodomain-like
TIGRFAMsTIGR015573.6E-25223278IPR006447Myb domain, plants
PfamPF002497.5E-8225276IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 328 aa     Download sequence    Send to blast
MASSSSLELN LSLKPSYVPK TIANLLKDLS HVDTASDKLA VLNDYINQHE EELNNIVAFK  60
HQLPQCMLLL MEALGTLKDE FMSIKNGMES ETGRPLMEFL AIKRKHYEEE QTDVSAAEKY  120
DCKGKSLMRS SPQFWNSNCN NKKQKTFIEF IQAPNQNPIP FKESTFSSSL AEKGCISKEI  180
IRKSYSRFAS VGTNNGDSRL NLRADNRTLN YHPRPLTQPI WKNNRRSWSP ELHARFVEAL  240
NLLGGIEVAT PKQIREVMQV EGLTNDQVKS HLQKYRLHCR RLPENYAKCL VKLQDPWHPQ  300
MYYGDPLSPE DSDENNSNPE GSLSRKS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4k_A2e-15225276455Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B2e-15225276455Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A2e-15225276455Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C2e-15225276455Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D2e-15225276455Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F2e-15225276455Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H2e-15225276455Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J2e-15225276455Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017974521.10.0PREDICTED: myb family transcription factor EFM
TrEMBLA0A061EHD10.0A0A061EHD1_THECC; DNA binding protein, putative
STRINGEOY038170.0(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM15410716
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37180.12e-37G2-like family protein
Publications ? help Back to Top
  1. Motamayor JC, et al.
    The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color.
    Genome Biol., 2013. 14(6): p. r53
    [PMID:23731509]