PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thecc1EG019003t1
Common NameTCM_019003
Organism
Theobroma cacao
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
Family G2-like
Protein Properties Length: 288aa    MW: 32983.6 Da    PI: 5.7553
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thecc1EG019003t1genomeCGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like84.51.1e-26222271251
           G2-like   2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQ 51 
                        r++W++eLH+rFvea++ LGG+e+AtPk+i++lm+v+gLt+++vkSHLQ
  Thecc1EG019003t1 222 DRRCWSSELHARFVEALNLLGGIEVATPKQIRDLMQVEGLTIDQVKSHLQ 271
                       69************************************************ PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466891.06E-13219275IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.607.8E-22220271IPR009057Homeodomain-like
PROSITE profilePS512949.124220278IPR017930Myb domain
TIGRFAMsTIGR015572.5E-22221274IPR006447Myb domain, plants
PfamPF002491.1E-5223271IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 288 aa     Download sequence    Send to blast
MNPTYVDLSL SLKPSYVPKS ISNLLEDLSK IDNESDKLSV LSDYICKHQE ELSTVEALKR  60
ELPQCRLLLM DEVAIETLKE GFMNIKEKME YQSRQPLVEY LPTMRKNRNE QEQREIWRTN  120
SAEEEYWNPI YAKKQKTLVL DSFQPPNLKV VQPCRDGNVE GLGLLSYKEC SSNSLGSSST  180
GKGKEVAIDQ SSRHQSLLYL KADDQTLNYH PKPLTQPIWK NDRRCWSSEL HARFVEALNL  240
LGGIEVATPK QIRDLMQVEG LTIDQVKSHL QVEFDLIKLN NACMYSS*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021296851.10.0transcription factor HHO5-like
TrEMBLA0A061EGP00.0A0A061EGP0_THECC; DNA binding protein, putative
STRINGEOY038130.0(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM15410716
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37180.22e-26G2-like family protein
Publications ? help Back to Top
  1. Motamayor JC, et al.
    The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color.
    Genome Biol., 2013. 14(6): p. r53
    [PMID:23731509]