PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thecc1EG018981t3
Common NameTCM_018981
Organism
Theobroma cacao
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
Family MIKC_MADS
Protein Properties Length: 235aa    MW: 26671.2 Da    PI: 8.8866
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thecc1EG018981t3genomeCGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF92.32.3e-291059251
                      ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
            SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                      +ienk+ rqvtfskRr+g+lKKA+E+SvLCdaeva+i+fs++gkl+e+s+
  Thecc1EG018981t3 10 QIENKISRQVTFSKRRTGLLKKAHEISVLCDAEVALIVFSNKGKLFEFST 59
                      69**********************************************96 PP
2K-box69.97.8e-2482167893
             K-box   8 sleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenka 93 
                        + ++ + +++ e  kL + ie Lqr++Rh+lGe+L++Lsl++Lq Leqq+++slk+iR++K++ l +q + l kk ke+++++++
  Thecc1EG018981t3  82 PTGSESQGNWSLECPKLMSTIEALQRNLRHFLGEELDPLSLRDLQLLEQQIDTSLKRIRTRKERALQNQNNMLAKKLKENEKTQTE 167
                       46677889*********************************************************************999988765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006631.637161IPR002100Transcription factor, MADS-box
SMARTSM004325.3E-38160IPR002100Transcription factor, MADS-box
SuperFamilySSF554551.26E-32289IPR002100Transcription factor, MADS-box
CDDcd002651.22E-40279No hitNo description
PRINTSPR004041.3E-29323IPR002100Transcription factor, MADS-box
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PfamPF003194.0E-251157IPR002100Transcription factor, MADS-box
PRINTSPR004041.3E-292338IPR002100Transcription factor, MADS-box
PRINTSPR004041.3E-293859IPR002100Transcription factor, MADS-box
PfamPF014862.2E-1985165IPR002487Transcription factor, K-box
PROSITE profilePS5129713.44488177IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 235 aa     Download sequence    Send to blast
MGRGRVQLRQ IENKISRQVT FSKRRTGLLK KAHEISVLCD AEVALIVFSN KGKLFEFSTD  60
SSMERILDRY EQQSNAERQL VPTGSESQGN WSLECPKLMS TIEALQRNLR HFLGEELDPL  120
SLRDLQLLEQ QIDTSLKRIR TRKERALQNQ NNMLAKKLKE NEKTQTEHAQ CEQQNLSQNS  180
SSFIQPPPAT IEFPSLTIGG SFQAIEGANK EAETQPQPST NTVIPPWMLS HVNR*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6byy_A2e-19174173MEF2 CHIMERA
6byy_B2e-19174173MEF2 CHIMERA
6byy_C2e-19174173MEF2 CHIMERA
6byy_D2e-19174173MEF2 CHIMERA
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in flower development. {ECO:0000250|UniProtKB:Q0HA25}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007032868.21e-171PREDICTED: truncated transcription factor CAULIFLOWER D isoform X4
SwissprotD7SMN61e-94FULL_VITVI; Agamous-like MADS-box protein FUL-L
TrEMBLA0A061ENA61e-171A0A061ENA6_THECC; Agamous-like MADS-box protein AGL8 isoform 3
STRINGEOY037921e-168(Theobroma cacao)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69120.12e-66MIKC_MADS family protein
Publications ? help Back to Top
  1. Jaillon O, et al.
    The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla.
    Nature, 2007. 449(7161): p. 463-7
    [PMID:17721507]
  2. Díaz-Riquelme J,Lijavetzky D,Martínez-Zapater JM,Carmona MJ
    Genome-wide analysis of MIKCC-type MADS box genes in grapevine.
    Plant Physiol., 2009. 149(1): p. 354-69
    [PMID:18997115]
  3. Motamayor JC, et al.
    The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color.
    Genome Biol., 2013. 14(6): p. r53
    [PMID:23731509]
  4. Grimplet J,Martínez-Zapater JM,Carmona MJ
    Structural and functional annotation of the MADS-box transcription factor family in grapevine.
    BMC Genomics, 2016. 17: p. 80
    [PMID:26818751]