PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Thecc1EG018971t1 | ||||||||
Common Name | TCM_018971 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
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Family | MYB | ||||||||
Protein Properties | Length: 261aa MW: 29542.5 Da PI: 9.4767 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 64.3 | 2.3e-20 | 16 | 63 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+eEd+ll ++v+++G g+W+++ar g++R++k+c++rw +yl Thecc1EG018971t1 16 KGPWTPEEDKLLTEYVNLHGEGRWSSVARSAGLNRSGKSCRLRWVNYL 63 79********************************************97 PP | |||||||
2 | Myb_DNA-binding | 51.1 | 3e-16 | 69 | 113 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rg T++E+ +++++++++G++ W+tIar+++ gRt++++k++w+++ Thecc1EG018971t1 69 RGHLTPQEEGIIIELHALWGNK-WSTIARYLP-GRTDNEIKNYWRTH 113 6778******************.*********.************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 17.987 | 11 | 63 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 5.62E-32 | 13 | 110 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.2E-17 | 15 | 65 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 3.4E-19 | 16 | 63 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 3.2E-24 | 17 | 70 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 2.64E-13 | 18 | 63 | No hit | No description |
PROSITE profile | PS51294 | 25.096 | 64 | 118 | IPR017930 | Myb domain |
SMART | SM00717 | 7.9E-14 | 68 | 116 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 3.6E-14 | 69 | 113 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 9.3E-24 | 71 | 117 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 3.18E-10 | 73 | 114 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009737 | Biological Process | response to abscisic acid | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 261 aa Download sequence Send to blast |
MVGMMGWEAP QQGWRKGPWT PEEDKLLTEY VNLHGEGRWS SVARSAGLNR SGKSCRLRWV 60 NYLRPGLKRG HLTPQEEGII IELHALWGNK WSTIARYLPG RTDNEIKNYW RTHFKKKEKS 120 SQKQEKRKAQ TLKLKQQLQQ QQPKPQPDKD EMKRVLPVQT EKANTKVSQV TEAQARPEMV 180 FMYPTLEDQC LPVTSPAAAA SWLDQYLVDE GLWGGLWNLD DPHGGLDQAG NCNKIAMQSQ 240 ATACSFGGDG SNLYNGGYIF * |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 3e-25 | 16 | 117 | 7 | 107 | B-MYB |
1h8a_C | 3e-25 | 16 | 117 | 27 | 127 | MYB TRANSFORMING PROTEIN |
Search in ModeBase |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00388 | DAP | Transfer from AT3G30210 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | JX584688 | 5e-38 | JX584688.1 Gossypium hirsutum clone NBRI_GE18056 microsatellite sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_007032859.2 | 0.0 | PREDICTED: myb-related protein 305 | ||||
TrEMBL | A0A061EFJ9 | 0.0 | A0A061EFJ9_THECC; Myb domain protein 121 | ||||
STRING | EOY03785 | 0.0 | (Theobroma cacao) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM4 | 28 | 2646 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G30210.1 | 2e-71 | myb domain protein 121 |
Link Out ? help Back to Top | |
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Phytozome | Thecc1EG018971t1 |
Entrez Gene | 18601749 |
Publications ? help Back to Top | |||
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