PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Thecc1EG018714t1 | ||||||||
Common Name | TCM_018714 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
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Family | C2H2 | ||||||||
Protein Properties | Length: 535aa MW: 59429.7 Da PI: 7.557 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 17.2 | 1.4e-05 | 45 | 67 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C+ Cgk F + L H+r H Thecc1EG018714t1 45 FQCKVCGKDFESMKALFGHMRHH 67 89*******************99 PP | |||||||
2 | zf-C2H2 | 16.2 | 2.9e-05 | 77 | 97 | 3 | 23 |
ETTTTEEESSHHHHHHHHHHT CS zf-C2H2 3 CpdCgksFsrksnLkrHirtH 23 C+ Cg+ F + L+ H+r+H Thecc1EG018714t1 77 CQECGRKFQSLKGLTAHMRLH 97 *******************99 PP | |||||||
3 | zf-C2H2 | 14.6 | 9.8e-05 | 369 | 391 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ykC +C+k+F+++ L H+ H Thecc1EG018714t1 369 YKCRICDKTFKSHQALGGHQTFH 391 9***************9999877 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 2.23E-10 | 45 | 97 | No hit | No description |
PROSITE profile | PS50157 | 12.653 | 45 | 72 | IPR007087 | Zinc finger, C2H2 |
Gene3D | G3DSA:3.30.160.60 | 9.3E-5 | 45 | 65 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
SMART | SM00355 | 0.0017 | 45 | 67 | IPR015880 | Zinc finger, C2H2-like |
Pfam | PF13912 | 6.6E-8 | 45 | 69 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 47 | 67 | IPR007087 | Zinc finger, C2H2 |
Gene3D | G3DSA:3.30.160.60 | 1.9E-5 | 66 | 97 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
PROSITE profile | PS50157 | 10.845 | 75 | 97 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.0093 | 75 | 97 | IPR015880 | Zinc finger, C2H2-like |
Pfam | PF13912 | 2.0E-5 | 76 | 97 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 77 | 97 | IPR007087 | Zinc finger, C2H2 |
SuperFamily | SSF57667 | 7.94E-9 | 368 | 391 | No hit | No description |
Pfam | PF13912 | 3.3E-6 | 368 | 393 | IPR007087 | Zinc finger, C2H2 |
PROSITE profile | PS50157 | 10.72 | 369 | 396 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.024 | 369 | 391 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 371 | 391 | IPR007087 | Zinc finger, C2H2 |
SuperFamily | SSF57667 | 7.94E-9 | 446 | 473 | No hit | No description |
Pfam | PF13912 | 5.8E-9 | 450 | 473 | IPR007087 | Zinc finger, C2H2 |
PROSITE profile | PS50157 | 9.452 | 451 | 478 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.74 | 451 | 473 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 453 | 473 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 535 aa Download sequence Send to blast |
MEKNSGKGKA KENMDFQGYG LRDNPKKSWK SLSFTDGSSS SMLKFQCKVC GKDFESMKAL 60 FGHMRHHSGR ERKRVNCQEC GRKFQSLKGL TAHMRLHPVK LRVSGEPGPG GPRQDLVLES 120 ITVRKKRSKR MRYSNAPNSS PSSLNESSDV FEIDQEVEDV ALCLIMLSWG VRNWSEFNSS 180 RESSDNSVIK SFHQSKEIIQ NEIGIPFGDG DESFQMKKPR VDKSNPDVSV SMNVFYEKKI 240 SECKELDSGI VTDKEEKIGS EAPNDMFCRD VEFRVSTVED ESGFELYATE IEERNSGEKM 300 TFRSIEVESG QDLMEGLDLA GLGSTKLSSC KDAMFDACDA EPGGNSSNKQ ICTPLNSEMS 360 DDSKKKNRYK CRICDKTFKS HQALGGHQTF HRKSNSCAIE QIENCEKNTQ SSSSPKTEAS 420 PKFRRVENVE NSVEQEINGV TSNGTSRCKV HKCGICFKVF ASGQALGGHK RSHILKESGT 480 RDKQPPMQIG FISDVLDLNL PALHNEEANG DVGFKSCRVG SDCKSEPLVS LVAN* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017974426.1 | 0.0 | PREDICTED: uncharacterized protein LOC18601620 | ||||
TrEMBL | A0A061EGU6 | 0.0 | A0A061EGU6_THECC; C2H2-like zinc finger protein, putative | ||||
STRING | EOY03617 | 0.0 | (Theobroma cacao) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM16241 | 9 | 13 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G45120.1 | 8e-19 | C2H2-like zinc finger protein |
Link Out ? help Back to Top | |
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Phytozome | Thecc1EG018714t1 |
Entrez Gene | 18601620 |
Publications ? help Back to Top | |||
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