PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thecc1EG018573t1
Common NameTCM_018573
Organism
Theobroma cacao
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
Family Dof
Protein Properties Length: 519aa    MW: 56100 Da    PI: 6.3553
Description Dof family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thecc1EG018573t1genomeCGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-Dof126.11.1e-39157217262
            zf-Dof   2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 
                       ++k+l+cprC+s++tkfCyynny+++qPr+fCk+C+ryWt+GG++rnvPvG+grrknk+s 
  Thecc1EG018573t1 157 PDKILPCPRCNSMDTKFCYYNNYNVNQPRHFCKNCQRYWTAGGTMRNVPVGAGRRKNKNSA 217
                       7899******************************************************976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD0074786.0E-31154214IPR003851Zinc finger, Dof-type
PfamPF027014.1E-32159215IPR003851Zinc finger, Dof-type
PROSITE profilePS5088428.975161215IPR003851Zinc finger, Dof-type
PROSITE patternPS013610163199IPR003851Zinc finger, Dof-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 519 aa     Download sequence    Send to blast
MSEPKDPAIK LFGKTIPLPD KSPKAAAAAT SANFCATCGD DNNNNNIDQD EDRCCSTNSS  60
PDENKTEERE AEKDTLGDET TETEQEVGGI KEDGLKQEGG APPVTSGEST NLEATSGASE  120
NPKTPSVEKE STALKTSKAE EDQSETSNSQ EKTLKKPDKI LPCPRCNSMD TKFCYYNNYN  180
VNQPRHFCKN CQRYWTAGGT MRNVPVGAGR RKNKNSASHY RHITVSEALH NAQTEIPSGV  240
HHPALKANGT VLTFGSDAPL CESMASVLNL ADKTMRNTTR NGFHKPEELK IPVSYRGGQN  300
GFECSNGSSV PTSKDEAGKA GSQDQMVRNC QGFSPQMPCF PGAPWPYPWN SAQWNSPIPP  360
HAFCSPGFPM PFYPAAAYWG CTVPGTWNVP WLPQPSSPKK TAPSSGPNSP TLGKHSRDEN  420
MGKLSNSGEE EPVKENNAEK CLWIPKTLRI NDPGEAARSS IWATLGIKND KPDSIGSGGL  480
FKSFQSKGDE RNQVPETSPV LQANPAALSR SINFHESS*
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00046PBMTransfer from AT5G39660Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021297674.10.0cyclic dof factor 2
TrEMBLA0A061EGG30.0A0A061EGG3_THECC; Dof zinc finger protein DOF5.2
STRINGEOY034870.0(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM54412848
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G39660.21e-116cycling DOF factor 2
Publications ? help Back to Top
  1. Motamayor JC, et al.
    The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color.
    Genome Biol., 2013. 14(6): p. r53
    [PMID:23731509]