PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thecc1EG018552t1
Common NameTCM_018552
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
Family ZF-HD
Protein Properties Length: 310aa    MW: 33319.5 Da    PI: 7.1693
Description ZF-HD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thecc1EG018552t1genomeCGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1ZF-HD_dimer102.82.3e-3265120458
       ZF-HD_dimer   4 vrYkeClkNhAaslGghavDGCgEfmpsegee.gtaaalkCaACgCHRnFHRreve 58 
                       ++Yk+ClkNhAa+lGgha+DGCgEfmps++++ +++++lkCaACgCHRnFH re+e
  Thecc1EG018552t1  65 ITYKKCLKNHAANLGGHALDGCGEFMPSPTATpTDPTSLKCAACGCHRNFHLREPE 120
                       79******************************9******************99986 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF047703.4E-2765119IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
ProDomPD1257745.0E-1765121IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMsTIGR015663.1E-2966118IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profilePS5152326.20667118IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
SuperFamilySSF466891.31E-9194240IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.603.1E-18196241IPR009057Homeodomain-like
TIGRFAMsTIGR015652.4E-18197236IPR006455Homeodomain, ZF-HD class
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 310 aa     Download sequence    Send to blast
MDIAPTSTTP LSTTPKSPEP ESETPTRIQP TKPVSFTNGV LKRHQPHHHP VHHHHHHPHA  60
PPIVITYKKC LKNHAANLGG HALDGCGEFM PSPTATPTDP TSLKCAACGC HRNFHLREPE  120
DPPLATATAT IEYQPHHRHH PPPPATQPHR SPNSASPPPI SSSYYPSAPH MLLALSGGLA  180
GALDNTHNNS HLPAGAFAER VGWKMQKRDE ELVQEFCSEV GVDRGVLKVW MHNNKNTFGK  240
KDQANGGGSG GVGSRNNGSG NNNNIDSELN HEENHESHEN NNNSGQNLNH HFESDSVAHV  300
GTNGSSSSS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wh7_A2e-141962373475ZF-HD homeobox family protein
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00387DAPTransfer from AT3G28920Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017975688.11e-137PREDICTED: zinc-finger homeodomain protein 9
SwissprotQ9LHF09e-68ZHD9_ARATH; Zinc-finger homeodomain protein 9
TrEMBLA0A061EEN60.0A0A061EEN6_THECC; Homeobox protein 34, putative
STRINGEOY034600.0(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM22202575
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G28920.11e-29homeobox protein 34
Publications ? help Back to Top
  1. Motamayor JC, et al.
    The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color.
    Genome Biol., 2013. 14(6): p. r53
    [PMID:23731509]
  2. Li B, et al.
    Network-Guided Discovery of Extensive Epistasis between Transcription Factors Involved in Aliphatic Glucosinolate Biosynthesis.
    Plant Cell, 2018. 30(1): p. 178-195
    [PMID:29317470]