PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Thecc1EG018552t1 | ||||||||
Common Name | TCM_018552 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
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Family | ZF-HD | ||||||||
Protein Properties | Length: 310aa MW: 33319.5 Da PI: 7.1693 | ||||||||
Description | ZF-HD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | ZF-HD_dimer | 102.8 | 2.3e-32 | 65 | 120 | 4 | 58 |
ZF-HD_dimer 4 vrYkeClkNhAaslGghavDGCgEfmpsegee.gtaaalkCaACgCHRnFHRreve 58 ++Yk+ClkNhAa+lGgha+DGCgEfmps++++ +++++lkCaACgCHRnFH re+e Thecc1EG018552t1 65 ITYKKCLKNHAANLGGHALDGCGEFMPSPTATpTDPTSLKCAACGCHRNFHLREPE 120 79******************************9******************99986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF04770 | 3.4E-27 | 65 | 119 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
ProDom | PD125774 | 5.0E-17 | 65 | 121 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
TIGRFAMs | TIGR01566 | 3.1E-29 | 66 | 118 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
PROSITE profile | PS51523 | 26.206 | 67 | 118 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
SuperFamily | SSF46689 | 1.31E-9 | 194 | 240 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 3.1E-18 | 196 | 241 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01565 | 2.4E-18 | 197 | 236 | IPR006455 | Homeodomain, ZF-HD class |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 310 aa Download sequence Send to blast |
MDIAPTSTTP LSTTPKSPEP ESETPTRIQP TKPVSFTNGV LKRHQPHHHP VHHHHHHPHA 60 PPIVITYKKC LKNHAANLGG HALDGCGEFM PSPTATPTDP TSLKCAACGC HRNFHLREPE 120 DPPLATATAT IEYQPHHRHH PPPPATQPHR SPNSASPPPI SSSYYPSAPH MLLALSGGLA 180 GALDNTHNNS HLPAGAFAER VGWKMQKRDE ELVQEFCSEV GVDRGVLKVW MHNNKNTFGK 240 KDQANGGGSG GVGSRNNGSG NNNNIDSELN HEENHESHEN NNNSGQNLNH HFESDSVAHV 300 GTNGSSSSS* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wh7_A | 2e-14 | 196 | 237 | 34 | 75 | ZF-HD homeobox family protein |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Putative transcription factor. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00387 | DAP | Transfer from AT3G28920 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017975688.1 | 1e-137 | PREDICTED: zinc-finger homeodomain protein 9 | ||||
Swissprot | Q9LHF0 | 9e-68 | ZHD9_ARATH; Zinc-finger homeodomain protein 9 | ||||
TrEMBL | A0A061EEN6 | 0.0 | A0A061EEN6_THECC; Homeobox protein 34, putative | ||||
STRING | EOY03460 | 0.0 | (Theobroma cacao) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM2220 | 25 | 75 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G28920.1 | 1e-29 | homeobox protein 34 |
Link Out ? help Back to Top | |
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Phytozome | Thecc1EG018552t1 |
Entrez Gene | 18601515 |
Publications ? help Back to Top | |||
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