PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thecc1EG018508t1
Common NameTCM_018508
Organism
Theobroma cacao
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
Family NAC
Protein Properties Length: 401aa    MW: 44857.5 Da    PI: 6.3153
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thecc1EG018508t1genomeCGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM166.21.1e-51141421128
               NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.kkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkev 92 
                       + pGfrFhPtdeelv +yL++k+++++l + e ik+vdiyk+ePwdLp + ++++ekewyf+++rd+ky+++ r+nr+t +g+Wkatg+d+++
  Thecc1EG018508t1  14 MLPGFRFHPTDEELVGFYLRRKIQHRPLLI-ELIKQVDIYKYEPWDLPtELAASGEKEWYFYCPRDRKYRNSARPNRVTGAGFWKATGTDRPI 105
                       579************************999.89***************556667899************************************ PP

               NAM  93 lsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128
                       +s+ +++ +glkk+Lvfy+gra kg ktdW+mhe+rl
  Thecc1EG018508t1 106 YSSdSTKCIGLKKSLVFYRGRAAKGIKTDWMMHEFRL 142
                       **955666***************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019412.09E-5712173IPR003441NAC domain
PROSITE profilePS5100557.1914173IPR003441NAC domain
PfamPF023652.2E-2516142IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009733Biological Processresponse to auxin
GO:0045770Biological Processpositive regulation of asymmetric cell division
GO:0048103Biological Processsomatic stem cell division
GO:0048829Biological Processroot cap development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 401 aa     Download sequence    Send to blast
MDEKNDVDKV EDVMLPGFRF HPTDEELVGF YLRRKIQHRP LLIELIKQVD IYKYEPWDLP  60
TELAASGEKE WYFYCPRDRK YRNSARPNRV TGAGFWKATG TDRPIYSSDS TKCIGLKKSL  120
VFYRGRAAKG IKTDWMMHEF RLPSLSDSAP PKKLLDKSLP ANDAWAICRI FKKTNSMAQR  180
ALSHPWISSL PETTASEILH QGAPCTQFSS ENISCTTEIE SAIHLCSNSE LQQGSTASFS  240
TVDIHSYKPF NTTVYRPSLF SVSNGDLHNN FMFSQLDMSG APKCTVDAAP MLLSSPLISD  300
VTKASESIDF GGQQQQYSGF SISLPQDMQG NAGVGESEEG MKRNSNATPD DNPWGTIRSM  360
GFPFSLPPNV PDTWKPNLPW DSPQCPSEMS TTYSTDKCYS *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A4e-501617619168NO APICAL MERISTEM PROTEIN
1ut4_B4e-501617619168NO APICAL MERISTEM PROTEIN
1ut7_A4e-501617619168NO APICAL MERISTEM PROTEIN
1ut7_B4e-501617619168NO APICAL MERISTEM PROTEIN
3swm_A6e-501617622171NAC domain-containing protein 19
3swm_B6e-501617622171NAC domain-containing protein 19
3swm_C6e-501617622171NAC domain-containing protein 19
3swm_D6e-501617622171NAC domain-containing protein 19
3swp_A6e-501617622171NAC domain-containing protein 19
3swp_B6e-501617622171NAC domain-containing protein 19
3swp_C6e-501617622171NAC domain-containing protein 19
3swp_D6e-501617622171NAC domain-containing protein 19
4dul_A4e-501617619168NAC domain-containing protein 19
4dul_B4e-501617619168NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPromotes periclinal root capforming cell divisions. Activates expression of its negative regulator SMB in a feedback loop for controlled switches in cell division plane. {ECO:0000269|PubMed:19081078}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Repressed by SMB in oriented-divised root cap stem cells. {ECO:0000269|PubMed:19081078}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017974795.10.0PREDICTED: protein FEZ
SwissprotQ9ZVH01e-100FEZ_ARATH; Protein FEZ
TrEMBLA0A061EFK40.0A0A061EFK4_THECC; NAC domain protein, IPR003441
STRINGEOY034430.0(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM30628200
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G26870.12e-98NAC family protein
Publications ? help Back to Top
  1. Motamayor JC, et al.
    The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color.
    Genome Biol., 2013. 14(6): p. r53
    [PMID:23731509]
  2. Bennett T,van den Toorn A,Willemsen V,Scheres B
    Precise control of plant stem cell activity through parallel regulatory inputs.
    Development, 2014. 141(21): p. 4055-64
    [PMID:25256342]