PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thecc1EG018082t1
Common NameTCM_018082
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
Family MYB
Protein Properties Length: 369aa    MW: 41206 Da    PI: 8.3601
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thecc1EG018082t1genomeCGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding53.27e-171461148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
   Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                      rg WT+eEd +++ +v  +G g+W++++++ g++R++k+c++rw +yl
  Thecc1EG018082t1 14 RGLWTAEEDARILAYVSNYGIGNWTLVPKKAGLNRCGKSCRLRWTNYL 61
                      788*******************************************97 PP

2Myb_DNA-binding50.54.8e-1669110346
                       SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
   Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                       ++T++E+e +++++k  G++ W++Ia++++ gRt++++k++w++
  Thecc1EG018082t1  69 SFTPQEEEVIINLHKHIGSR-WSLIAKHLP-GRTDNDVKNYWNT 110
                       79******************.*********.***********97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.603.4E-24564IPR009057Homeodomain-like
PROSITE profilePS5129425.443965IPR017930Myb domain
SuperFamilySSF466891.09E-3011108IPR009057Homeodomain-like
SMARTSM007172.5E-131363IPR001005SANT/Myb domain
PfamPF002491.2E-141461IPR001005SANT/Myb domain
CDDcd001671.11E-101761No hitNo description
Gene3DG3DSA:1.10.10.605.9E-2565116IPR009057Homeodomain-like
PROSITE profilePS5129419.90166116IPR017930Myb domain
SMARTSM007171.3E-1466114IPR001005SANT/Myb domain
CDDcd001671.04E-1169112No hitNo description
PfamPF002492.5E-1469110IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0048658Biological Processanther wall tapetum development
GO:0052545Biological Processcallose localization
GO:0055046Biological Processmicrogametogenesis
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 369 aa     Download sequence    Send to blast
MGRPPCCDKS NVKRGLWTAE EDARILAYVS NYGIGNWTLV PKKAGLNRCG KSCRLRWTNY  60
LRPDLKHESF TPQEEEVIIN LHKHIGSRWS LIAKHLPGRT DNDVKNYWNT KLRKKLSKMG  120
IDPITHKPIS QVLSDYGNIN SLPNTENLFG SFGKNFRNTL MPKNEPSSIP IGLPNNCMIM  180
KPVIEQVQDN SSAANNLSWD ILAQGQVNNR GSIQPNFFSE VNSSCSSSSS TAFSQLSSPQ  240
SSSFQASQSE ITPTSPFNWS DFLLSDPLFH DNSQQKQEHK FPGPRRSSTM TQKEISQFKA  300
NGGSDHSFNR IELQGFGAYD YSSSTMNQVN IKTDASSLSA SSFVDAILDR DSEIRSQFPE  360
ILDGSFDY*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A5e-29141167108B-MYB
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021297730.10.0transcription factor MYB35
TrEMBLA0A061EFX60.0A0A061EFX6_THECC; Duplicated homeodomain-like superfamily protein, putative
STRINGEOY032770.0(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM4282646
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G28470.17e-77MYB family protein
Publications ? help Back to Top
  1. Motamayor JC, et al.
    The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color.
    Genome Biol., 2013. 14(6): p. r53
    [PMID:23731509]