PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Thecc1EG018082t1 | ||||||||
Common Name | TCM_018082 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
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Family | MYB | ||||||||
Protein Properties | Length: 369aa MW: 41206 Da PI: 8.3601 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 53.2 | 7e-17 | 14 | 61 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg WT+eEd +++ +v +G g+W++++++ g++R++k+c++rw +yl Thecc1EG018082t1 14 RGLWTAEEDARILAYVSNYGIGNWTLVPKKAGLNRCGKSCRLRWTNYL 61 788*******************************************97 PP | |||||||
2 | Myb_DNA-binding | 50.5 | 4.8e-16 | 69 | 110 | 3 | 46 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 ++T++E+e +++++k G++ W++Ia++++ gRt++++k++w++ Thecc1EG018082t1 69 SFTPQEEEVIINLHKHIGSR-WSLIAKHLP-GRTDNDVKNYWNT 110 79******************.*********.***********97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 3.4E-24 | 5 | 64 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 25.443 | 9 | 65 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 1.09E-30 | 11 | 108 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 2.5E-13 | 13 | 63 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.2E-14 | 14 | 61 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.11E-10 | 17 | 61 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 5.9E-25 | 65 | 116 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 19.901 | 66 | 116 | IPR017930 | Myb domain |
SMART | SM00717 | 1.3E-14 | 66 | 114 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.04E-11 | 69 | 112 | No hit | No description |
Pfam | PF00249 | 2.5E-14 | 69 | 110 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0048658 | Biological Process | anther wall tapetum development | ||||
GO:0052545 | Biological Process | callose localization | ||||
GO:0055046 | Biological Process | microgametogenesis | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 369 aa Download sequence Send to blast |
MGRPPCCDKS NVKRGLWTAE EDARILAYVS NYGIGNWTLV PKKAGLNRCG KSCRLRWTNY 60 LRPDLKHESF TPQEEEVIIN LHKHIGSRWS LIAKHLPGRT DNDVKNYWNT KLRKKLSKMG 120 IDPITHKPIS QVLSDYGNIN SLPNTENLFG SFGKNFRNTL MPKNEPSSIP IGLPNNCMIM 180 KPVIEQVQDN SSAANNLSWD ILAQGQVNNR GSIQPNFFSE VNSSCSSSSS TAFSQLSSPQ 240 SSSFQASQSE ITPTSPFNWS DFLLSDPLFH DNSQQKQEHK FPGPRRSSTM TQKEISQFKA 300 NGGSDHSFNR IELQGFGAYD YSSSTMNQVN IKTDASSLSA SSFVDAILDR DSEIRSQFPE 360 ILDGSFDY* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 5e-29 | 14 | 116 | 7 | 108 | B-MYB |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021297730.1 | 0.0 | transcription factor MYB35 | ||||
TrEMBL | A0A061EFX6 | 0.0 | A0A061EFX6_THECC; Duplicated homeodomain-like superfamily protein, putative | ||||
STRING | EOY03277 | 0.0 | (Theobroma cacao) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM4 | 28 | 2646 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G28470.1 | 7e-77 | MYB family protein |
Link Out ? help Back to Top | |
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Phytozome | Thecc1EG018082t1 |
Entrez Gene | 18601366 |
Publications ? help Back to Top | |||
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