PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Thecc1EG017681t1

Common Name

TCM_017681

Organism

Theobroma cacao

Taxonomic ID

3641

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma

Family

NAC

Protein Properties

Length: 656aa MW: 74397.1 Da PI: 5.554

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Thecc1EG017681t1	genome	CGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	183.2	6.1e-57	6	133	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdke 91 lppGfrFhPtdeelvv+yLk+k++g+k+el e+i+evd+yk+ePwdLp k + +++ ewyfFs+rd+ky++g+r+nratksgyWkatgkd++ Thecc1EG017681t1 6 LPPGFRFHPTDEELVVYYLKRKINGRKIEL-EIIPEVDLYKCEPWDLPgKsLLPSKDLEWYFFSPRDRKYPNGSRTNRATKSGYWKATGKDRK 97 79**************************.99***********6434555777******************************* PP NAM 92 vlskkgelvglkktLvfykgrapkgektdWvmheyrl 128 v s + ++vg+kktLv+y+grap+g++tdWvmheyrl Thecc1EG017681t1 98 VNS-QMRAVGMKKTLVYYRGRAPHGTRTDWVMHEYRL 133 .9999**************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	1.19E-64	4	156	IPR003441	NAC domain
PROSITE profile	PS51005	61.907	6	156	IPR003441	NAC domain
Pfam	PF02365	3.9E-30	7	133	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0016021	Cellular Component	integral component of membrane
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 656 aa Download sequence Send to blast
MAPVSLPPGF RFHPTDEELV VYYLKRKING RKIELEIIPE VDLYKCEPWD LPGKSLLPSK 60 DLEWYFFSPR DRKYPNGSRT NRATKSGYWK ATGKDRKVNS QMRAVGMKKT LVYYRGRAPH 120 GTRTDWVMHE YRLDERECET PSGLQDAYAL CRVFKKSATG PKIGEHYLAT TANQITSEHS 180 SSIELYSEGR CDESSDFAIP LDTCSPSILN RSAIDICEAR DAKWMQSLSE DAFGLSNPPS 240 FSSYGTLPYP PSKVDVALEC ARLQHRLSLP PLEVQDFPQV GLTDYKVMRT TPMRESQHET 300 DILREILSVA HASQELINPT GQQDAWGGSS SNANDFTFMT ADDYMSRYSL EESSTRSIDI 360 SEVHLGDLKA ERMVENLRWV GMSSKDMEQY CFMEETKIVP IENISSFTRN ECNGIQGESG 420 HNNNCDGFID TKINDPEIED FPQGFMDDDP NEHFLDEGNI DDLTSSPSFE VVEDIKINHG 480 MFVSTRQVAE TFFHQIVPSQ TVKVHQNPVI ATSFVLGKAE SHETRYNKGN SFFRKFNACA 540 SGKFMEIITF TEPCKKTASA FLWIVVLLLM HGFYLEEDIT NEKLMDGLSA KETKEKALTV 600 MSITGKPRTK WNKKKEKYSL VKASTWNDFG WLLTKLGFFL TISLVLCTLL ASTLY*

Sequence ? help Back to Top

Protein Sequence Length: 656 aa Download sequence Send to blast

MAPVSLPPGF RFHPTDEELV VYYLKRKING RKIELEIIPE VDLYKCEPWD LPGKSLLPSK  60
DLEWYFFSPR DRKYPNGSRT NRATKSGYWK ATGKDRKVNS QMRAVGMKKT LVYYRGRAPH  120
GTRTDWVMHE YRLDERECET PSGLQDAYAL CRVFKKSATG PKIGEHYLAT TANQITSEHS  180
SSIELYSEGR CDESSDFAIP LDTCSPSILN RSAIDICEAR DAKWMQSLSE DAFGLSNPPS  240
FSSYGTLPYP PSKVDVALEC ARLQHRLSLP PLEVQDFPQV GLTDYKVMRT TPMRESQHET  300
DILREILSVA HASQELINPT GQQDAWGGSS SNANDFTFMT ADDYMSRYSL EESSTRSIDI  360
SEVHLGDLKA ERMVENLRWV GMSSKDMEQY CFMEETKIVP IENISSFTRN ECNGIQGESG  420
HNNNCDGFID TKINDPEIED FPQGFMDDDP NEHFLDEGNI DDLTSSPSFE VVEDIKINHG  480
MFVSTRQVAE TFFHQIVPSQ TVKVHQNPVI ATSFVLGKAE SHETRYNKGN SFFRKFNACA  540
SGKFMEIITF TEPCKKTASA FLWIVVLLLM HGFYLEEDIT NEKLMDGLSA KETKEKALTV  600
MSITGKPRTK WNKKKEKYSL VKASTWNDFG WLLTKLGFFL TISLVLCTLL ASTLY*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	2e-57	1	162	12	171	NO APICAL MERISTEM PROTEIN
1ut4_B	2e-57	1	162	12	171	NO APICAL MERISTEM PROTEIN
1ut7_A	2e-57	1	162	12	171	NO APICAL MERISTEM PROTEIN
1ut7_B	2e-57	1	162	12	171	NO APICAL MERISTEM PROTEIN
3swm_A	2e-57	1	162	15	174	NAC domain-containing protein 19
3swm_B	2e-57	1	162	15	174	NAC domain-containing protein 19
3swm_C	2e-57	1	162	15	174	NAC domain-containing protein 19
3swm_D	2e-57	1	162	15	174	NAC domain-containing protein 19
3swp_A	2e-57	1	162	15	174	NAC domain-containing protein 19
3swp_B	2e-57	1	162	15	174	NAC domain-containing protein 19
3swp_C	2e-57	1	162	15	174	NAC domain-containing protein 19
3swp_D	2e-57	1	162	15	174	NAC domain-containing protein 19
4dul_A	2e-57	1	162	12	171	NAC domain-containing protein 19
4dul_B	2e-57	1	162	12	171	NAC domain-containing protein 19
Search in ModeBase

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00212	DAP	Transfer from AT1G65910	Download

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017974318.1	0.0	PREDICTED: NAC domain-containing protein 86
TrEMBL	A0A061EDT4	0.0	A0A061EDT4_THECC; NAC domain protein, IPR003441, putative isoform 1
STRING	EOY03135	0.0	(Theobroma cacao)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM10112	26	32

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G65910.1	1e-173	NAC domain containing protein 28

Link Out ? help Back to Top
Phytozome	Thecc1EG017681t1
Entrez Gene	18601266

Publications ? help Back to Top
Motamayor JC, et al. The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color. Genome Biol., 2013. 14(6): p. r53 [PMID:23731509]