PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Thecc1EG017656t1 | ||||||||
Common Name | TCM_017656 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
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Family | C2H2 | ||||||||
Protein Properties | Length: 258aa MW: 27806.9 Da PI: 5.2933 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 12.9 | 0.00034 | 105 | 127 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++C + F ++ L H++ H Thecc1EG017656t1 105 FSCNYCQRKFFSSQALGGHQNAH 127 89*****************9988 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 3.78E-6 | 103 | 132 | No hit | No description |
PROSITE profile | PS50157 | 11.344 | 105 | 132 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 107 | 127 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 258 aa Download sequence Send to blast |
MAPVINLQVE ASENESDVTS QVASNLSIQE TSAAPSNESL ANSSHLTNPL DTQSNSEPVS 60 LDLTLCITID ESGGRDSAGL SLASTSESSN DPALRTTASA IPRVFSCNYC QRKFFSSQAL 120 GGHQNAHKRE RTLAKRAMRM GIFSERYASL ATLPLHGTSF RSLGIKAHCS THQSFVPPAR 180 LPDSRNNARF EHGYLGLPIF TEDDEAELLW PGSFRQISEA VNTHPGFVLP GSSNMNFVEV 240 TQPIDLESST PDLTLKL* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Acts as negative regulator of abscisic acid (ABA) signaling during germination and early seedling development. {ECO:0000269|PubMed:24808098}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_007032204.2 | 0.0 | PREDICTED: zinc finger protein 4 | ||||
Swissprot | Q39263 | 4e-57 | ZFP4_ARATH; Zinc finger protein 4 | ||||
TrEMBL | A0A061EDS8 | 0.0 | A0A061EDS8_THECC; Zinc finger protein 4 | ||||
STRING | EOY03130 | 0.0 | (Theobroma cacao) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM6672 | 26 | 43 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G66140.1 | 1e-59 | zinc finger protein 4 |
Link Out ? help Back to Top | |
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Phytozome | Thecc1EG017656t1 |
Entrez Gene | 18601261 |
Publications ? help Back to Top | |||
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