PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thecc1EG017382t1
Common NameTCM_017382
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
Family ERF
Protein Properties Length: 272aa    MW: 29883 Da    PI: 4.5892
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thecc1EG017382t1genomeCGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP259.11e-182775355
               AP2  3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                      + GVr ++ +gr++AeIrdps+   + r++lg+f+taeeAa a+++a+++++g
  Thecc1EG017382t1 27 FLGVRKRP-WGRYAAEIRDPST---KERHWLGTFDTAEEAALAYDRAARSMRG 75
                      56******.**********965...5*************************99 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003803.3E-332689IPR001471AP2/ERF domain
PROSITE profilePS5103220.4682683IPR001471AP2/ERF domain
CDDcd000185.43E-302682No hitNo description
PRINTSPR003673.5E-82738IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.2E-282783IPR001471AP2/ERF domain
SuperFamilySSF541712.42E-202784IPR016177DNA-binding domain
PfamPF008471.6E-112975IPR001471AP2/ERF domain
PRINTSPR003673.5E-84965IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009739Biological Processresponse to gibberellin
GO:0010030Biological Processpositive regulation of seed germination
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 272 aa     Download sequence    Send to blast
MNTSTSKSKK KQTQSQETAG SANGGRFLGV RKRPWGRYAA EIRDPSTKER HWLGTFDTAE  60
EAALAYDRAA RSMRGPRSRT NFVYSDMPPG SSVTSIVSPD ERSHLFVNSS DPEDQPHPNP  120
QLYFNQDSTT TQCHFSSGYP EMTQEDVWGS STSCHQDQPV IDNKGWSYSS ESELPPLPSS  180
FSADSSVTSN SGYGTGQGTW SDQHSSTGLM DWPDDPTRQI NNEFESTGSD SFFGFDTSEY  240
VHSPLFSRMP SVSDTAPDSF DLGGSSSSYF F*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A1e-192282162ATERF1
3gcc_A1e-192282162ATERF1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00509DAPTransfer from AT5G13910Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007032062.20.0PREDICTED: ethylene-responsive transcription factor LEP
TrEMBLA0A061EEC30.0A0A061EEC3_THECC; Integrase-type DNA-binding superfamily protein, putative
STRINGEOY029880.0(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM10281650
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G13910.15e-34ERF family protein
Publications ? help Back to Top
  1. Motamayor JC, et al.
    The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color.
    Genome Biol., 2013. 14(6): p. r53
    [PMID:23731509]