PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Thecc1EG017382t1 | ||||||||
Common Name | TCM_017382 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
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Family | ERF | ||||||||
Protein Properties | Length: 272aa MW: 29883 Da PI: 4.5892 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 59.1 | 1e-18 | 27 | 75 | 3 | 55 |
AP2 3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 + GVr ++ +gr++AeIrdps+ + r++lg+f+taeeAa a+++a+++++g Thecc1EG017382t1 27 FLGVRKRP-WGRYAAEIRDPST---KERHWLGTFDTAEEAALAYDRAARSMRG 75 56******.**********965...5*************************99 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00380 | 3.3E-33 | 26 | 89 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 20.468 | 26 | 83 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 5.43E-30 | 26 | 82 | No hit | No description |
PRINTS | PR00367 | 3.5E-8 | 27 | 38 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 1.2E-28 | 27 | 83 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 2.42E-20 | 27 | 84 | IPR016177 | DNA-binding domain |
Pfam | PF00847 | 1.6E-11 | 29 | 75 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 3.5E-8 | 49 | 65 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009739 | Biological Process | response to gibberellin | ||||
GO:0010030 | Biological Process | positive regulation of seed germination | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 272 aa Download sequence Send to blast |
MNTSTSKSKK KQTQSQETAG SANGGRFLGV RKRPWGRYAA EIRDPSTKER HWLGTFDTAE 60 EAALAYDRAA RSMRGPRSRT NFVYSDMPPG SSVTSIVSPD ERSHLFVNSS DPEDQPHPNP 120 QLYFNQDSTT TQCHFSSGYP EMTQEDVWGS STSCHQDQPV IDNKGWSYSS ESELPPLPSS 180 FSADSSVTSN SGYGTGQGTW SDQHSSTGLM DWPDDPTRQI NNEFESTGSD SFFGFDTSEY 240 VHSPLFSRMP SVSDTAPDSF DLGGSSSSYF F* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 1e-19 | 22 | 82 | 1 | 62 | ATERF1 |
3gcc_A | 1e-19 | 22 | 82 | 1 | 62 | ATERF1 |
Search in ModeBase |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00509 | DAP | Transfer from AT5G13910 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_007032062.2 | 0.0 | PREDICTED: ethylene-responsive transcription factor LEP | ||||
TrEMBL | A0A061EEC3 | 0.0 | A0A061EEC3_THECC; Integrase-type DNA-binding superfamily protein, putative | ||||
STRING | EOY02988 | 0.0 | (Theobroma cacao) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM10 | 28 | 1650 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G13910.1 | 5e-34 | ERF family protein |
Link Out ? help Back to Top | |
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Phytozome | Thecc1EG017382t1 |
Entrez Gene | 18601158 |
Publications ? help Back to Top | |||
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