PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thecc1EG017247t1
Common NameTCM_017247
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
Family SBP
Protein Properties Length: 328aa    MW: 36329.9 Da    PI: 9.2443
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thecc1EG017247t1genomeCGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP123.68.5e-3975150277
                       -SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S-- CS
               SBP   2 CqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkq 77 
                       C v+gC++dl + +ey+rrh+vCe+hsk pvv++ g+eqrfCqqCsrfh++ efD+ekrsCr+rL++hn+rrrk +
  Thecc1EG017247t1  75 CLVDGCKSDLGKYREYYRRHRVCEHHSKDPVVTIGGEEQRFCQQCSRFHAVGEFDDEKRSCRKRLDGHNRRRRKYR 150
                       *************************************************************************976 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1100.101.8E-3170136IPR004333Transcription factor, SBP-box
PROSITE profilePS5114129.62472149IPR004333Transcription factor, SBP-box
SuperFamilySSF1036123.43E-3674154IPR004333Transcription factor, SBP-box
PfamPF031102.5E-3075148IPR004333Transcription factor, SBP-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 328 aa     Download sequence    Send to blast
MDLDSEDSAL GLSQLEDTGQ NNGGLSVDSK LGGLRNVRVK SLNKFKNSRG LKMESPPSGS  60
IKRSAVAEGN VRISCLVDGC KSDLGKYREY YRRHRVCEHH SKDPVVTIGG EEQRFCQQCS  120
RFHAVGEFDD EKRSCRKRLD GHNRRRRKYR PESLFTSAES NLGNTILQFS VATPATVYDS  180
YEQLDLVGRL KPPNPLACIK HVENREFAGL LTHDHERINQ VIPVVSDGRR FANVIPSSEG  240
GRGSQKMQAN GIIRPIDSYC ALSLLSPLVP LHSNVIHSIA QASSSHGGMG QPFSSTLIPE  300
RNQTLQWQHD PSSLAQKIAR RPGLDYI*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ul4_A8e-24751481184squamosa promoter binding protein-like 4
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007031914.20.0PREDICTED: teosinte glume architecture 1
TrEMBLA0A061ECY20.0A0A061ECY2_THECC; Squamosa promoter-binding protein-like (SBP domain) transcription factor family protein
STRINGEOY028400.0(Theobroma cacao)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G50670.17e-39SBP family protein
Publications ? help Back to Top
  1. Motamayor JC, et al.
    The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color.
    Genome Biol., 2013. 14(6): p. r53
    [PMID:23731509]