PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Thecc1EG017247t1 | ||||||||
Common Name | TCM_017247 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
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Family | SBP | ||||||||
Protein Properties | Length: 328aa MW: 36329.9 Da PI: 9.2443 | ||||||||
Description | SBP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SBP | 123.6 | 8.5e-39 | 75 | 150 | 2 | 77 |
-SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S-- CS SBP 2 CqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkq 77 C v+gC++dl + +ey+rrh+vCe+hsk pvv++ g+eqrfCqqCsrfh++ efD+ekrsCr+rL++hn+rrrk + Thecc1EG017247t1 75 CLVDGCKSDLGKYREYYRRHRVCEHHSKDPVVTIGGEEQRFCQQCSRFHAVGEFDDEKRSCRKRLDGHNRRRRKYR 150 *************************************************************************976 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:4.10.1100.10 | 1.8E-31 | 70 | 136 | IPR004333 | Transcription factor, SBP-box |
PROSITE profile | PS51141 | 29.624 | 72 | 149 | IPR004333 | Transcription factor, SBP-box |
SuperFamily | SSF103612 | 3.43E-36 | 74 | 154 | IPR004333 | Transcription factor, SBP-box |
Pfam | PF03110 | 2.5E-30 | 75 | 148 | IPR004333 | Transcription factor, SBP-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 328 aa Download sequence Send to blast |
MDLDSEDSAL GLSQLEDTGQ NNGGLSVDSK LGGLRNVRVK SLNKFKNSRG LKMESPPSGS 60 IKRSAVAEGN VRISCLVDGC KSDLGKYREY YRRHRVCEHH SKDPVVTIGG EEQRFCQQCS 120 RFHAVGEFDD EKRSCRKRLD GHNRRRRKYR PESLFTSAES NLGNTILQFS VATPATVYDS 180 YEQLDLVGRL KPPNPLACIK HVENREFAGL LTHDHERINQ VIPVVSDGRR FANVIPSSEG 240 GRGSQKMQAN GIIRPIDSYC ALSLLSPLVP LHSNVIHSIA QASSSHGGMG QPFSSTLIPE 300 RNQTLQWQHD PSSLAQKIAR RPGLDYI* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ul4_A | 8e-24 | 75 | 148 | 11 | 84 | squamosa promoter binding protein-like 4 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_007031914.2 | 0.0 | PREDICTED: teosinte glume architecture 1 | ||||
TrEMBL | A0A061ECY2 | 0.0 | A0A061ECY2_THECC; Squamosa promoter-binding protein-like (SBP domain) transcription factor family protein | ||||
STRING | EOY02840 | 0.0 | (Theobroma cacao) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G50670.1 | 7e-39 | SBP family protein |
Link Out ? help Back to Top | |
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Phytozome | Thecc1EG017247t1 |
Entrez Gene | 18601046 |
Publications ? help Back to Top | |||
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