PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thecc1EG017070t1
Common NameTCM_017070
Organism
Theobroma cacao
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
Family NAC
Protein Properties Length: 591aa    MW: 66714.1 Da    PI: 5.9787
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thecc1EG017070t1genomeCGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM143.71e-44231511128
               NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk...kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdk 90 
                       lppG+ F+P+d+el+v+yL+++v +k+l+  + ikev++yk+ P dL +   + +++e+ewyfF++rd+ky +g+r++r++ +g+Wkatg+d+
  Thecc1EG017070t1  23 LPPGYCFKPRDDELIVHYLRRRVCNKPLPP-NRIKEVELYKYSPDDLTQadnASSKKESEWYFFTPRDRKYVNGSRPSRTAGDGFWKATGSDT 114
                       79*************************999.77**************843544444667********************************** PP

               NAM  91 evlskkgelvglkktLvfykgrapkgektdWvmheyrl 128
                       +v+  kg+ vg kktLv+y g+ pkgekt+W+mhey l
  Thecc1EG017070t1 115 SVMF-KGNIVGFKKTLVYYYGKPPKGEKTNWIMHEYVL 151
                       ****.999****************************87 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.7E-5121177IPR003441NAC domain
PROSITE profilePS5100551.44723178IPR003441NAC domain
PfamPF023654.2E-2324151IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 591 aa     Download sequence    Send to blast
MKEAKPTPNL PVFINAEDFL DSLPPGYCFK PRDDELIVHY LRRRVCNKPL PPNRIKEVEL  60
YKYSPDDLTQ ADNASSKKES EWYFFTPRDR KYVNGSRPSR TAGDGFWKAT GSDTSVMFKG  120
NIVGFKKTLV YYYGKPPKGE KTNWIMHEYV LSNPPARQRA GKDDMRLDDW VLCRLHNRNH  180
TKVGATRQAT DQKQEEENYA ITAAQTEILE QQYENILPLQ IEIPAAQAEI LGQQYGNIPP  240
PQTEIPAART EILKQEYGNI LPPQTEQVQV QDFNLLLPQQ ICSMPLYNPY DDSTSGFASF  300
PESLHPMLEY HFTMFPRQDV SVYGNIITTV APIATIPPPQ FQHSEGHDPL NMHQQQQQFS  360
GAPSIHNPSN MHQQQQFSSV PNIHDPLNMH QQQFSGAPYI LDPSNMHQQQ QQFSSAPNIP  420
DSLNMDQQQQ QFSGAPNIHG PLNMHQQEQQ FSDAPSIHGP LNMHKQAQQL SDAPNINEFL  480
VADQYILVTD HGLPDLQMPV LLVSVPITSS SKPRCFYPNL FGQLQAGDLD IVEPTIGAEL  540
KYGVASKLRY VIEGLFQHIN GGKFLNSCMI VEVQSFARYT FPTAAASLPG *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A3e-502218014170Stress-induced transcription factor NAC1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017974441.10.0PREDICTED: NAC transcription factor 29
TrEMBLA0A061EK780.0A0A061EK78_THECC; NAC domain protein
STRINGEOY026540.0(Theobroma cacao)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G01720.11e-51NAC family protein
Publications ? help Back to Top
  1. Motamayor JC, et al.
    The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color.
    Genome Biol., 2013. 14(6): p. r53
    [PMID:23731509]