PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thecc1EG017068t1
Common NameTCM_017068
Organism
Theobroma cacao
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
Family C3H
Protein Properties Length: 469aa    MW: 52550.2 Da    PI: 6.453
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thecc1EG017068t1genomeCGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH36.58e-1291113426
                       ---SGGGGTS--TTTTT-SS-SS CS
           zf-CCCH   4 elCrffartGtCkyGdrCkFaHg 26 
                       e C+f+++tG+Ck+G +CkF+H+
  Thecc1EG017068t1  91 EDCSFYLKTGHCKFGLNCKFNHP 113
                       89********************9 PP
2zf-CCCH25.71.9e-08136158527
                       --SGGGGTS--TTTTT-SS-SSS CS
           zf-CCCH   5 lCrffartGtCkyGdrCkFaHgp 27 
                       +C+++++tG C+yGd C++ H++
  Thecc1EG017068t1 136 ECKYYRATGGCRYGDACRYRHSK 158
                       7******************9985 PP
3zf-CCCH29.51.3e-09196218527
                       --SGGGGTS--TTTTT-SS-SSS CS
           zf-CCCH   5 lCrffartGtCkyGdrCkFaHgp 27 
                       +C++++ +G CkyG+ C+++H++
  Thecc1EG017068t1 196 ECKYYLTSGGCKYGNACRYSHSK 218
                       7********************95 PP
4zf-CCCH37.73.5e-12246268426
                       ---SGGGGTS--TTTTT-SS-SS CS
           zf-CCCH   4 elCrffartGtCkyGdrCkFaHg 26 
                       ++C++++rtG C yG++C+F+H+
  Thecc1EG017068t1 246 KECPYYMRTGSCAYGPNCRFNHP 268
                       68********************9 PP
5zf-CCCH33.19.8e-11383409127
                       --S---SGGGGTS--TTTTT-SS-SSS CS
           zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                       +++++C++f++tG+Cky + CkF+H++
  Thecc1EG017068t1 383 PGEPECPYFMKTGYCKYKAACKFHHPK 409
                       5799*********************96 PP
6zf-CCCH25.13e-08430455227
                       -S---SGGGGTS--TTTTT-SS-SSS CS
           zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                       ++++C ++ ++G+CkyG +C F+H++
  Thecc1EG017068t1 430 DRKICWNYEKYGICKYGTSCFFNHPE 455
                       7899********************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010314.18387115IPR000571Zinc finger, CCCH-type
SMARTSM003566.2E-587114IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.09E-591114IPR000571Zinc finger, CCCH-type
PfamPF006423.0E-991113IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.105.3E-493112IPR000571Zinc finger, CCCH-type
SMARTSM003562.5E-5131158IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.849131159IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.4E-6135161IPR000571Zinc finger, CCCH-type
PfamPF006423.8E-6136158IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.3E-7137161IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.821191219IPR000571Zinc finger, CCCH-type
SMARTSM003561.2E-4191218IPR000571Zinc finger, CCCH-type
SuperFamilySSF902297.46E-6196222IPR000571Zinc finger, CCCH-type
PfamPF006424.9E-7196218IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.4E-5197219IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.943242270IPR000571Zinc finger, CCCH-type
SMARTSM003562.0E-6244269IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.49E-6245270IPR000571Zinc finger, CCCH-type
PfamPF006428.9E-10246268IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.3E-5248267IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.342382410IPR000571Zinc finger, CCCH-type
SMARTSM003569.1E-6382409IPR000571Zinc finger, CCCH-type
PfamPF006422.2E-8384409IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.44E-5387409IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.8E-4388407IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.399428456IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.7E-6428457IPR000571Zinc finger, CCCH-type
SMARTSM003568.9E-4430455IPR000571Zinc finger, CCCH-type
PfamPF006421.3E-5430455IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 469 aa     Download sequence    Send to blast
MGSCEEYYSS LPETPNQTQT ESALGFNSST LLSNLYPGTE KEEESLVEGL KNVTFEESDR  60
KSYAGDDNSE NLQVDWQNGE NYQYPLRPYA EDCSFYLKTG HCKFGLNCKF NHPDGGGSQD  120
KENHKGWTAE QTGQIECKYY RATGGCRYGD ACRYRHSKED YVLAPLEVNS FGLPVQVGIN  180
EKREQDGSVE QTGQIECKYY LTSGGCKYGN ACRYSHSKEK SRYLEKSEIP PPELNFLGLP  240
IRMLEKECPY YMRTGSCAYG PNCRFNHPDP TTAEGSNIFS SDSSGFGGHS SGNYNRESSL  300
LPLSSKPTAA SLSLNMMPDK HVPYLNQSSS YAHGMHLNSE WNGHQEKTSH PYSASSIPNA  360
IKMADNSKLH QEQIQADEFP ERPGEPECPY FMKTGYCKYK AACKFHHPKT RPSKPPVFIL  420
SSAGLPLRPD RKICWNYEKY GICKYGTSCF FNHPENHFSS AGPVDSIP*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007031725.20.0PREDICTED: zinc finger CCCH domain-containing protein 67
TrEMBLA0A061ECN10.0A0A061ECN1_THECC; Zinc finger C-x8-C-x5-C-x3-H type family protein isoform 1
STRINGEOY026510.0(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM1808379
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G48440.13e-73C3H family protein
Publications ? help Back to Top
  1. Motamayor JC, et al.
    The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color.
    Genome Biol., 2013. 14(6): p. r53
    [PMID:23731509]