PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Thecc1EG017061t2

Common Name

TCM_017061

Organism

Theobroma cacao

Taxonomic ID

3641

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma

Family

FAR1

Protein Properties

Length: 818aa MW: 94253.5 Da PI: 6.3864

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Thecc1EG017061t2	genome	CGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	70.6	3.6e-22	139	225	2	90
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 +Y++YA GFs+rk+ +ks+ ng i++r+++C+++g+r +++ + r++++e rtgC a++++ ++ +gk++v+++e++HnHe++ Thecc1EG017061t2 139 CYSRYAVLEGFSIRKDFVNKSRVNGAIVSRRYTCYRQGYRPGKHTV--NVRKPQQEMRTGCLAHMTIARQPNGKFRVSHFETKHNHEFV 225 7************************************9987755..99***********************************86 PP
2	FAR1	91	1.6e-28	273	361	1	90
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 +fYn+YA +vGFsvrk++ ++sk +g + +r+f+C +eg+r+++k++ + +r+r+etr+gC a+l+++++ dgk++vt++e++HnHel+ Thecc1EG017061t2 273 EFYNTYAGRVGFSVRKDYVNRSKIDGAVASRRFTCFREGFRQKDKRD-LNVKRPRKETRIGCLAQLVISRQPDGKYRVTHFEEKHNHELV 361 6*****************************************999.9999**********************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	1.9E-20	139	225	IPR004330	FAR1 DNA binding domain
Pfam	PF03101	9.2E-26	273	361	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	3.8E-28	483	576	IPR018289	MULE transposase domain
Pfam	PF04434	1.9E-5	751	797	IPR007527	Zinc finger, SWIM-type
PROSITE profile	PS50966	10.113	762	798	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	4.5E-4	773	800	IPR006564	Zinc finger, PMZ-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 818 aa Download sequence Send to blast
MDSSDPDILT QGQNLDIENE LQESNQVDVD VCQECQSLEA CSVEKSQEVT ESESDSQSPN 60 ASSVDKSEVE INADECQTAQ VPIVNKCEID VDGEQNSQSP NALSVDVLEA RVSVKDEDDI 120 FVVPAVGMEF ESEEHAHKCY SRYAVLEGFS IRKDFVNKSR VNGAIVSRRY TCYRQGYRPG 180 KHTVNVRKPQ QEMRTGCLAH MTIARQPNGK FRVSHFETKH NHEFVNPSTA HLLPSQKRLT 240 FAQAVEADLA SSSGMDGVPK LGMGFKSEDH AYEFYNTYAG RVGFSVRKDY VNRSKIDGAV 300 ASRRFTCFRE GFRQKDKRDL NVKRPRKETR IGCLAQLVIS RQPDGKYRVT HFEEKHNHEL 360 VAACRVRMLR SQKRLAVARI VEGNALESYK IQAKSAYEVS CNSIGDCVDH GYDPIDHRSK 420 LSSKRTRDMR EGEAERIQQY FQSRKIKNRS FFYAIQLDAE NQIANIFWAD AKMIMDYSDF 480 GDVLCFDTTY MLNKDCRLFS PFLGVNHHKQ MVIFGAALLY DDTVDSFKWL FQKFLEAMSG 540 KNPKTILTDE DAVVSEAVNS IFPEIHQRMC VWHVYQSALK QLGDKFVGPS FVNDLSSCFF 600 NHEEEEDFIA AWNIMLDVHG LWENDWLNKI FETREQWAIA YKRHIFCADI NSVQLHESFI 660 VNLKKYLKPE SDVLSFFKHL GKVVNDWHYK ELEANYDMSQ NMPRLMGDVI LLKHARDAYT 720 PRIFELFQQE YEMCLNIVIN QCIESETAFE YKVSIYGQPR EYAISYNLAD NTVFCSCMKY 780 EFMGVLCSHA LKVLDYRNIR LLPSQYILKR WTRDARV*

Sequence ? help Back to Top

Protein Sequence Length: 818 aa Download sequence Send to blast

MDSSDPDILT QGQNLDIENE LQESNQVDVD VCQECQSLEA CSVEKSQEVT ESESDSQSPN  60
ASSVDKSEVE INADECQTAQ VPIVNKCEID VDGEQNSQSP NALSVDVLEA RVSVKDEDDI  120
FVVPAVGMEF ESEEHAHKCY SRYAVLEGFS IRKDFVNKSR VNGAIVSRRY TCYRQGYRPG  180
KHTVNVRKPQ QEMRTGCLAH MTIARQPNGK FRVSHFETKH NHEFVNPSTA HLLPSQKRLT  240
FAQAVEADLA SSSGMDGVPK LGMGFKSEDH AYEFYNTYAG RVGFSVRKDY VNRSKIDGAV  300
ASRRFTCFRE GFRQKDKRDL NVKRPRKETR IGCLAQLVIS RQPDGKYRVT HFEEKHNHEL  360
VAACRVRMLR SQKRLAVARI VEGNALESYK IQAKSAYEVS CNSIGDCVDH GYDPIDHRSK  420
LSSKRTRDMR EGEAERIQQY FQSRKIKNRS FFYAIQLDAE NQIANIFWAD AKMIMDYSDF  480
GDVLCFDTTY MLNKDCRLFS PFLGVNHHKQ MVIFGAALLY DDTVDSFKWL FQKFLEAMSG  540
KNPKTILTDE DAVVSEAVNS IFPEIHQRMC VWHVYQSALK QLGDKFVGPS FVNDLSSCFF  600
NHEEEEDFIA AWNIMLDVHG LWENDWLNKI FETREQWAIA YKRHIFCADI NSVQLHESFI  660
VNLKKYLKPE SDVLSFFKHL GKVVNDWHYK ELEANYDMSQ NMPRLMGDVI LLKHARDAYT  720
PRIFELFQQE YEMCLNIVIN QCIESETAFE YKVSIYGQPR EYAISYNLAD NTVFCSCMKY  780
EFMGVLCSHA LKVLDYRNIR LLPSQYILKR WTRDARV*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_007031717.2	0.0	PREDICTED: protein FAR1-RELATED SEQUENCE 7
Refseq	XP_007031718.2	0.0	PREDICTED: protein FAR1-RELATED SEQUENCE 7
TrEMBL	A0A061EK26	0.0	A0A061EK26_THECC; Far1-related sequence 5, putative isoform 1
STRING	EOY02643	0.0	(Theobroma cacao)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	1e-116	FAR1-related sequence 5

Link Out ? help Back to Top
Phytozome	Thecc1EG017061t2
Entrez Gene	18600915

Publications ? help Back to Top
Motamayor JC, et al. The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color. Genome Biol., 2013. 14(6): p. r53 [PMID:23731509]