PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thecc1EG017051t1
Common NameTCM_017051
Organism
Theobroma cacao
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
Family MYB
Protein Properties Length: 391aa    MW: 44475.3 Da    PI: 9.9566
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thecc1EG017051t1genomeCGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding42.91.1e-131461148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
   Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                      rg+WT eEd +l + +   G ++W+t+++  g+ R++k+c++rw +yl
  Thecc1EG017051t1 14 RGPWTIEEDHKLMNFILNNGIHCWRTVPKLAGLLRCGKSCRLRWINYL 61
                      89******************************99************97 PP
2Myb_DNA-binding57.43.4e-1867110146
                       TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
   Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                       rg++T+ E++++++++++lG++ W++Ia++++ gRt++++k++w++
  Thecc1EG017051t1  67 RGAFTESEEDQIIQLHARLGNR-WSKIASHFP-GRTDNEIKNHWNT 110
                       89********************.*********.***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.604.3E-21564IPR009057Homeodomain-like
PROSITE profilePS5129413.486961IPR017930Myb domain
SuperFamilySSF466891.54E-2811108IPR009057Homeodomain-like
SMARTSM007172.4E-61363IPR001005SANT/Myb domain
PfamPF002491.3E-111461IPR001005SANT/Myb domain
CDDcd001679.12E-51661No hitNo description
PROSITE profilePS5129427.69662116IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.6E-2665117IPR009057Homeodomain-like
SMARTSM007171.5E-1766114IPR001005SANT/Myb domain
PfamPF002496.5E-1767110IPR001005SANT/Myb domain
CDDcd001673.42E-1269110No hitNo description
PfamPF061552.6E-19283360IPR010376Domain of unknown function DUF971
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 391 aa     Download sequence    Send to blast
MGRQPCCDKV GLKRGPWTIE EDHKLMNFIL NNGIHCWRTV PKLAGLLRCG KSCRLRWINY  60
LRPDLKRGAF TESEEDQIIQ LHARLGNRWS KIASHFPGRT DNEIKNHWNT RIKKKLKLLG  120
LDPVTHKPIE KAEKTDGKNK MTSNSNSSNK QEASFESKSE DDHAITVSTS RDEKSEETQV  180
IFDETNDLLN NYQMLCGSFD LESWLNQDTN TSSSYTSSFS VEESNNPSLV RPRSKDSSSS  240
TRKREHFEEN SVSLARAMQR AIPRIHTVVA TPGLKSFSLN APRIVEVEYA NGSKFCLSAE  300
FLRVYSPAAD GKIRSIGGEK VISGRRHVGI MSTEPVGNYG VRIVFDDLHR TGIYSWDYFY  360
NLGTNKFTLM RNYIKTLKKH GLSRDPPKRK *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A6e-27121165108B-MYB
1gv2_A6e-27121162105MYB PROTO-ONCOGENE PROTEIN
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00510DAPTransfer from AT5G14340Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021299144.10.0LOW QUALITY PROTEIN: myb-related protein 315-like
TrEMBLA0A061EK050.0A0A061EK05_THECC; Myb domain protein 40
STRINGEOY026290.0(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM4282646
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G14340.11e-85myb domain protein 40
Publications ? help Back to Top
  1. Motamayor JC, et al.
    The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color.
    Genome Biol., 2013. 14(6): p. r53
    [PMID:23731509]