PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thecc1EG017029t1
Common NameTCM_017029
Organism
Theobroma cacao
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
Family NF-X1
Protein Properties Length: 1088aa    MW: 118447 Da    PI: 7.896
Description NF-X1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thecc1EG017029t1genomeCGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-NF-X123.31.3e-07280298119
          zf-NF-X1   1 CGkHkCqklCHeGpCppCp 19 
                       CG+H+C+ +CH GpC+pC+
  Thecc1EG017029t1 280 CGRHRCELICHVGPCDPCQ 298
                       ******************6 PP
2zf-NF-X118.83.5e-06498515118
          zf-NF-X1   1 CGkHkCqklCHeGpCppC 18 
                       CG+H+C++lCH G CppC
  Thecc1EG017029t1 498 CGQHSCESLCHSGHCPPC 515
                       ****************** PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF578504.59E-7101171No hitNo description
PROSITE profilePS500168.876109170IPR019787Zinc finger, PHD-finger
PROSITE profilePS500899.568112168IPR001841Zinc finger, RING-type
PROSITE patternPS013590112167IPR019786Zinc finger, PHD-type, conserved site
CDDcd060083.01E-5201263No hitNo description
SMARTSM004380.023225243IPR000967Zinc finger, NF-X1-type
PfamPF014228.1227242IPR000967Zinc finger, NF-X1-type
CDDcd060085.78E-12270318No hitNo description
PfamPF014227.9E-6280297IPR000967Zinc finger, NF-X1-type
SMARTSM004389.4E-5280299IPR000967Zinc finger, NF-X1-type
CDDcd060083.79E-7334377No hitNo description
PfamPF014220.0078344361IPR000967Zinc finger, NF-X1-type
SMARTSM004380.0021344363IPR000967Zinc finger, NF-X1-type
CDDcd060086.61E-12392440No hitNo description
SMARTSM004380.0019402421IPR000967Zinc finger, NF-X1-type
PfamPF014220.002404420IPR000967Zinc finger, NF-X1-type
PfamPF0142218460470IPR000967Zinc finger, NF-X1-type
SMARTSM00438230460494IPR000967Zinc finger, NF-X1-type
CDDcd060081.06E-8488531No hitNo description
PfamPF014225.8E-4498515IPR000967Zinc finger, NF-X1-type
SMARTSM004384.1E-4498517IPR000967Zinc finger, NF-X1-type
CDDcd060084.30E-6545593No hitNo description
PfamPF0142222555572IPR000967Zinc finger, NF-X1-type
SMARTSM004380.036555573IPR000967Zinc finger, NF-X1-type
PfamPF014220.026608623IPR000967Zinc finger, NF-X1-type
SMARTSM004382.1608638IPR000967Zinc finger, NF-X1-type
CDDcd060082.22E-4636685No hitNo description
PfamPF0142212640666IPR000967Zinc finger, NF-X1-type
SMARTSM004380.081647668IPR000967Zinc finger, NF-X1-type
PfamPF014242.8E-4779844IPR001374R3H domain
Gene3DG3DSA:3.30.70.3305.7E-5886937IPR012677Nucleotide-binding alpha-beta plait domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0000166Molecular Functionnucleotide binding
GO:0003676Molecular Functionnucleic acid binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 1088 aa     Download sequence    Send to blast
MSNSETMSFQ GRNRPRNPSQ STRQEWVPRG SSSTTTTVVS SSPGASNSTP IVNHTSTRND  60
NRNRQIGRST NHRRDKEKER SENHVVVKEI DPNLPQLVQE IQDKLIRSTV ECMICYDTVR  120
RSAPIWSCSS CYSIFHLNCI KKWARAPTSV DLVAEKNQGI NWRCPGCQFV QLTSSKEIRY  180
ICFCGKRTDP PSDLYLTPHS CGEPCGKPLE KVLGLGAGVM KDELCPHVCV LQCHPGPCPP  240
CKAFSPPRLC PCGKKVITTR CFDRQSVLTC GQCCDKLLEC GRHRCELICH VGPCDPCQVP  300
INAPCFCGKK VEAVICGDMA VKGEVKTEDG IFSCSSTCGN KLRCGNHNCA EICHPGHCGD  360
CELMPNKIKS CYCRKTSLQE QRQSCLDPIP TCSEVCEKFL PCEVHQCDQV CHSGDCPSCS  420
VVVTQKCQCG ATSRRVECYK TTLENERFTC DKPCGRKKNC GRHRCSERCC LLSNTNNLPS  480
GDWDPHFCQM ACGKKLRCGQ HSCESLCHSG HCPPCFETIF TDLTCACGRT SIPPPLPCGT  540
PPPSCQLPCS VPQACGHSSS HSCHFGDCPP CSVPVAKKCI GGHVVLRNIP CGSKDIRCNK  600
LCGKTRQCGL HACGRTCHPA PCDISSGSEP GIRISCGQTC GAPRRDCRHT CTAPCHPSAP  660
CPDVRCDFRV TIACSCSRIT ATVPCDAGGF TSSFNADTVY EASIIQKLPV ALQPVDSTGK  720
KIPLGQRKLM CDDECAKLER KRVLEDAFNI TPPNLDALHF GENSVTSELL SDLYRRDAKW  780
VLAIEERCKF LVLGKNRGTA TGLKVHVFCP MLKDKRDAVR IIAERWKLSV SAAGWEPKRF  840
VVVHVTPKSK PPPRILGVKG ATSIGALHPP VFDPLVDMDP RLVVSFLDLP READISALVL  900
RFGGECELVW LNDKNALAVF SDPARAATAM RRLDHGSVYY GVVIFVQNAG ASVASTANNA  960
WGGAGQNSAL KGNPWKKAVV EELGWREDSW GDEESFGGTS DLGSVWKGKE TPIAASINRW  1020
SVLDSETGVS SSSRTVQTED LSKPAGVLSN SGIDSNTAKS NSAGLSGGDF NEPEPLEVVD  1080
DWEKAYE*
Functional Description ? help Back to Top
Source Description
UniProtMediates E2-dependent ubiquitination (By similarity). Confers resistance to osmotic stress such as high salinity. Promotes H(2)O(2) production. Negative regulator of some defense-related genes via an salicylic acid (SA)-dependent signaling pathway. Confers susceptibility to the compatible phytopathogen Pseudomonas syringae pv. tomato strain DC3000 (Pst DC3000). Mediates resistance to type A trichothecenes (phytotoxins produced by phytopathogenic fungi). {ECO:0000250, ECO:0000269|PubMed:16905136, ECO:0000269|PubMed:18069941, ECO:0000269|PubMed:19704430}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By brassinosteroids, osmotic stress and high salinity. Accumulates in response to SA, ethylene, methyl jasmonate (MeJA), flagellin (e.g. flg22), and type A trichothecenes such as T-2 toxin and diacetoxyscirpenol (DAS), but not in response to type B trichothecenes such as deoxynivalenol (DON). {ECO:0000269|PubMed:16905136, ECO:0000269|PubMed:18069941, ECO:0000269|PubMed:19704430}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007031673.20.0PREDICTED: NF-X1-type zinc finger protein NFXL1
RefseqXP_017975584.10.0PREDICTED: NF-X1-type zinc finger protein NFXL1
SwissprotQ9SY590.0NFXL1_ARATH; NF-X1-type zinc finger protein NFXL1
TrEMBLA0A061EDW40.0A0A061EDW4_THECC; NF-X-like 1 isoform 1
STRINGEOY026000.0(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM59552647
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G10170.10.0NF-X-like 1
Publications ? help Back to Top
  1. Motamayor JC, et al.
    The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color.
    Genome Biol., 2013. 14(6): p. r53
    [PMID:23731509]